Finegoldia magna: FMG_0631
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Entry
FMG_0631 CDS
T00661
Name
(GenBank) putative Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
fma
Finegoldia magna
Pathway
fma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FMG_0631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fma03019
]
FMG_0631
Messenger RNA biogenesis [BR:
fma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FMG_0631
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAG08049
UniProt:
B0S109
LinkDB
All DBs
Position
696228..697895
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AA seq
555 aa
AA seq
DB search
MAKKNIDKLKVIPLGGLNEIGKNMTVVEYKDDIIVVDCGMTFPDEEMLGVDIVIPDISYL
EKNKEKIRGIVITHGHEDHIGAIPYVLKKLDAPVYGTKLTMGLLENKILEHKLSLKSLHT
VDYRKPIKLGAFSVEFVKVCHSIPDSASLAITTPVGVLFFTGDFKIDYTPIDNNRMDFGR
IASIGNKGVLALFADSTNVERQGYTLSEKSVGKTFINLFDDAPARIIVATFASNVHRIQQ
VISAAEHFNKKVALSGRSMINTVNVARELGYIKVGDKTIIDINDINKHKPNEIVLLTTGS
QGEPMSAMTRMANGTHRKVHLDPTDTVILSATPIPGNDNQVSSVINKLMEMGVKVIYSSL
ADVHVSGHACQEELKLMHSLVRPKFFVPLHGEMRHLKCHANLALDMGMKEKDIVIADNGN
TIEFTRKSINLVDTKFASNILVDGLGVGDVGNVVLRDRRHLSEDGLIVVVITLDARNKEV
IAGPDIISRGFVYVKENNDLMEECKSVVQNVLDECYTKNIYDWSTLKHNIRETLKKFLYQ
EIKRNPMILPVIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaatattgataaattaaaagttattccactaggaggacttaatgaaata
gggaaaaatatgacagtagtagaatacaaagatgatattattgtcgttgattgtggaatg
acatttcctgatgaagaaatgttgggggtagatatagtaatccctgatatttcttatcta
gaaaaaaataaggaaaagatcagaggaatagttataactcacggtcacgaagaccatatt
ggagcaattccttatgtattaaaaaaattagatgcccctgtttatggaacaaaacttaca
atgggactgttagaaaataaaatattggagcacaagttaagtttgaagtcacttcataca
gttgattacagaaaaccaattaaacttggtgcttttagcgtagagtttgtaaaagtatgt
cactcaattccagattctgcaagtttagctataacaactcctgtaggagttttgttcttt
actggtgattttaaaatagactacactccaattgataacaatagaatggattttggaaga
atagcttccataggtaataagggagttctagcactattcgctgatagtacaaatgttgaa
agacaaggttatactttaagtgaaaaaagtgttggtaaaacttttataaatttgtttgac
gatgcacctgctagaataattgtagcgacctttgcatctaatgttcacagaattcaacaa
gttatttcagctgctgagcatttcaataaaaaagtagctctttcaggaaggtctatgatt
aacactgttaacgttgcgcgtgagttaggatacattaaagttggcgacaaaactattatt
gatataaatgatatcaataagcataaaccaaacgaaatagttcttttaacaactggttct
caaggtgaaccaatgagtgcaatgacgagaatggctaatggtacacacagaaaagttcat
ttagatcctactgatacagttattttgtctgctacaccaattccaggaaatgataatcaa
gttagttcagttatcaataaattgatggaaatgggagttaaagttatttattcttccttg
gctgatgtacacgtaagtggacacgcttgtcaagaagaactgaaattgatgcattcatta
gttagacctaaattttttgttccacttcatggagaaatgagacacttaaagtgtcatgca
aatttagcacttgatatgggaatgaaagaaaaagatattgtgattgcagacaatggtaat
acaattgaatttacaagaaaaagcattaatcttgtcgacactaaatttgcaagtaacatt
ttagtagatggacttggagtaggtgatgttggaaatgttgtattaagagacagaagacat
ttatcagaagacggattaattgttgttgtaattactttggatgctagaaacaaagaagtt
atagctggtcctgacatcatttcaagaggatttgtatatgttaaagaaaataatgattta
atggaagagtgcaaatctgttgttcaaaatgttttagacgaatgttacacgaaaaatatc
tacgattggtcaactcttaaacacaatattagagaaacattaaagaaattcttgtaccaa
gaaatcaagagaaatccaatgatattgccagtaataatggaggtataa
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