Fomitiporia mediterranea: FOMMEDRAFT_106067
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Entry
FOMMEDRAFT_106067 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_106067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_106067
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FOMMEDRAFT_106067
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FOMMEDRAFT_106067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
18670156
NCBI-ProteinID:
XP_007265445
JGI:
Fomme1_106067
LinkDB
All DBs
Position
Unknown
AA seq
185 aa
AA seq
DB search
MSPPDLLLPGQPVPVTEPLPHVGDGLYLRDGIIRAGVMGTPQLIGSSILIQKRRPHPPAP
NSVVLGTITRLSPLQAIISITVVDGMPLSLGEEFTGVIRSQDVRATEKDKVKLADCFRGG
DVVKGIVISLGDARSYYITTARNDLGVIFATSEAGATMEPLSWQEMRCPKTNKIEKRKCA
KPEGL
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgtcacctccagacttactattacctggccaaccagtcccggtcactgagcctctccct
catgtcggagatggcctgtatctcagagacggtatcattcgggctggtgttatgggtact
ccccagctgattggttcttcaatattaatacagaagaggagaccacatccgcctgcaccc
aactccgtagttcttggaacaataacgcgtctttctcctcttcaagctataatctcaatt
accgtcgttgacgggatgcccttgtctcttggcgaagaatttacaggcgtaattcgttcg
caagatgtgcgagcgactgaaaaggacaaggtcaaactcgctgactgctttcgtggaggc
gatgtggtaaaaggcatagttatatcactgggcgatgcaagaagctactacatcactaca
gctcgaaatgacctcggtgtcatatttgcaacaagcgaagcaggcgctacgatggagcca
ttatcatggcaggagatgcgctgtcccaaaaccaacaaaatcgaaaagcggaaatgtgca
aagccagaagggctatag
DBGET
integrated database retrieval system
