Fomitiporia mediterranea: FOMMEDRAFT_107201
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Entry
FOMMEDRAFT_107201 CDS
T03132
Name
(RefSeq) DEAD-domain-containing protein
KO
K14811
ATP-dependent RNA helicase DBP3 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_107201
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_107201
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOMMEDRAFT_107201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
18670257
NCBI-ProteinID:
XP_007266067
JGI:
Fomme1_107201
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MALEIGDSQIERNQNLAAGANLKRKREHRKDKTDNNADRKEKKKKKKEINGERNGHGDTN
VTVDEDNNKTKKREKKEGHTKNENTSLGDSQQDGIAEEGKKKKKKKKRNGEKIREHEDNV
PNTDEQDVEPDKKKRKRERKRQREANENALEEDAQQADAEMEQTEETNGAVETTSVKSSK
KKKRRDQQEAHRTSTTTDATSSRSSTSVSCAEVSEYLAKHGVTIDCGSGSLPSNLTPILS
FSSLLPHLPEPLHNAFDSFKEPTPIQACSWPASLDGRDVVGIAETGSGKTLAFGVPAIAH
MARHQNDLPPSSKKSKSKHGNKKSQAQVLVVAPTRELALQTHETFTELGKPFGLTSVAVY
GGVDKDPQRRALSQVGAAMVVGTPGRILDLVNEGACDLSGVTYLVLDEADRMLDKGFEND
IRAIIAQCAPSKQRQTLMFSATWPDAVRRLASTFQRNPVRITVGSDDLTANRRVEQVVEV
FDDQYEKDSRLLSHLQKLKPQNGRSNTQSHSQPQDDTRILVFVLYKKEATRVEQTLLRHK
FSVSSIHGDLSQSARISALENFKKGETQILVATDVAARGLDIPSVGLVLNYSFPLTVEDY
VHRIGRTGRGGRSGKSITFFTGDNHEKALAGELAKVMREGGFDASPLKKFPMTIKKKEHG
VYGAFYRDDIPASATPTHMKF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaaatcggcgactcccagatcgagcgcaaccaaaatttggcagctggagca
aatctgaagcggaagcgggaacatcgaaaggacaagaccgataacaacgctgatcgtaaa
gagaagaaaaagaagaagaaagaaatcaacggagaacgtaacggacacggcgacactaat
gtaacagtcgacgaagacaataataagacgaagaaacgagaaaagaaagaagggcacaca
aaaaacgaaaatacatcgctcggagattcgcaacaggacggtatagctgaggaaggcaaa
aagaagaagaagaagaagaaacgaaacggcgaaaagatacgcgaacacgaggataatgtg
ccgaatactgacgagcaagacgtggagccggacaagaagaagaggaaacgagagcgaaag
agacaacgtgaggcgaacgaaaatgccttggaggaggatgctcagcaggcggatgccgag
atggagcaaacggaagaaacgaacggagctgtggaaaccactagtgtgaagagtagcaag
aagaaaaagaggagagatcaacaagaggctcaccgtactagtactacaacagatgccacg
tcgtcgaggtcaagcacctccgtttcctgcgcagaggtatcagagtatctggcgaaacac
ggtgtcaccattgattgtggttctggctcccttcctagcaacttaaccccaattttgtcc
ttttcgtctcttctacctcatctgcccgagcccctgcacaatgcattcgattctttcaaa
gaacctacacctatccaagcttgctcatggccagctagtctagacggaagagatgtagta
gggatcgctgagactgggagtggaaagaccctcgcattcggcgtacccgccatcgctcac
atggcgagacaccagaacgaccttcccccgtcctccaaaaagtcaaaatcaaaacatggc
aacaagaaatctcaggctcaagtccttgtagtcgcaccaacccgtgagctagctctccaa
acacacgagacgttcacggaactcggaaaaccatttgggttgacgagtgttgctgtttat
ggaggtgtggataaagatcctcagcgtcgagccttgtcgcaagtgggcgcagctatggtt
gtaggaactcccgggcggatattggatttggttaatgaaggggcgtgtgacttgagtggg
gtcacttatctcgttctcgacgaagcggatcgcatgctcgataaaggattcgagaatgat
atccgtgcaattatcgcgcaatgcgcgccctctaaacaaagacaaacgctcatgtttagt
gccacttggcctgatgcagtgaggagactagcatcgactttccaacgtaaccctgtgcgc
ataaccgttgggagcgatgaccttactgcgaatcgcagagttgagcaagttgtggaggtt
ttcgacgatcaatacgaaaaagactcccgcctcctttcccatctccaaaaactcaaacct
caaaacggccgctctaacacccaatcccattctcaacctcaagacgacacccgcatcctc
gtcttcgtactctataaaaaagaagcaacccgcgtcgaacagactctcctccgacacaag
ttcagcgtaagcagtatccacggcgacctctcgcaatccgctcgaatctctgctctggag
aacttcaaaaagggtgagacgcagatattagttgctacagacgtcgcagcgcgtggattg
gatataccgagtgttgggcttgtgttgaattatagttttccgttgactgttgaggattat
gtgcaccggattgggaggactggacgaggaggccgaagtggcaagtcaatcacgttcttc
acaggggataatcacgagaaagctctcgcgggagagcttgccaaagtcatgcgagaagga
ggcttcgacgcgagtccgctgaagaagttcccgatgacgattaagaagaaggaacatggt
gtttatggagcgttttatagagatgatatccctgctagtgcaacgcctacgcacatgaag
ttttga
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