KEGG   Fomitiporia mediterranea: FOMMEDRAFT_107963
Entry
FOMMEDRAFT_107963 CDS       T03132                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
fme  Fomitiporia mediterranea
Pathway
fme03040  Spliceosome
fme04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_107963
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    FOMMEDRAFT_107963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_107963
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_107963
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_107963
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     FOMMEDRAFT_107963
Spliceosome [BR:fme03041]
 Complex A
  U1 snRNP components
   Sm proteins
    FOMMEDRAFT_107963
  U2 snRNP components
    FOMMEDRAFT_107963
 Complex B
  U1 snRNP components
    FOMMEDRAFT_107963
  U4/U6.U5 tri-snRNP components
    FOMMEDRAFT_107963
 Complex C
  U2 snRNP components
    FOMMEDRAFT_107963
DNA replication proteins [BR:fme03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     FOMMEDRAFT_107963
SSDB
Motif
Pfam: LSM SM-ATX E3_binding LSM14
Other DBs
NCBI-GeneID: 18670314
NCBI-ProteinID: XP_007266644
JGI: Fomme1_107963
LinkDB
Position
Unknown
AA seq 126 aa
MSSSLGVPVKLLHESLGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRVSQL
DQVYIRGSMVRFFIVPDMLQNAPMFKRVGPNAMRGRGIGTARGRATIMRANARRGRGQPA
ARGIRR
NT seq 381 nt   +upstreamnt  +downstreamnt
atgtccagcagtctaggtgtacctgtaaaacttcttcacgagtccctcgggcatgtaata
acagttgagcttaagactgggcagctgtataggggaaaacttgctgaagccgaggactcc
ctcaatatctcgttaaaagacatcaccgtgaccgggagagatggtcgtgtctcgcagttg
gaccaagtttacattagaggaagcatggttcgctttttcatcgtgcctgatatgcttcag
aacgcaccgatgttcaaacgtgtaggaccaaatgcaatgaggggtaggggtatcggtacg
gctcgtggtcgtgcgaccatcatgcgggcaaatgcacgccgtggtcgtgggcaacctgca
gcccgtggtattcgccgttga

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