Fomitiporia mediterranea: FOMMEDRAFT_109397
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Entry
FOMMEDRAFT_109397 CDS
T03132
Name
(RefSeq) replication factor-a protein
KO
K07466
replication factor A1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03030
DNA replication
fme03420
Nucleotide excision repair
fme03430
Mismatch repair
fme03440
Homologous recombination
fme03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOMMEDRAFT_109397
03420 Nucleotide excision repair
FOMMEDRAFT_109397
03430 Mismatch repair
FOMMEDRAFT_109397
03440 Homologous recombination
FOMMEDRAFT_109397
03460 Fanconi anemia pathway
FOMMEDRAFT_109397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fme03000
]
FOMMEDRAFT_109397
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_109397
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_109397
Transcription factors [BR:
fme03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
FOMMEDRAFT_109397
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
FOMMEDRAFT_109397
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
FOMMEDRAFT_109397
MMR (mismatch excision repair)
FOMMEDRAFT_109397
DSBR (double strand breaks repair)
HR (homologous recombination)
FOMMEDRAFT_109397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF5020
RADX
VD10_N
Zn_ribbon_TiaS
Zn_ribbon_6
HROB
DZR_2
Motif
Other DBs
NCBI-GeneID:
18670419
NCBI-ProteinID:
XP_007267609
JGI:
Fomme1_109397
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MSDIQLTTGSIERLLSVAPGDNELWETGHVLQLLSLKKIGAAREGAAPDRFRLVVSDGVH
YTQAMLATQLTGMVDEGEIAKYSVVKVEKLTCNNVQNKKLLILLALTPVGNPGEKIGDPG
SLEVPGQNASSSTEAQATPTTAVNTPVAQQQKSVQSQKPPQQQQQQQRANGPVVFPIEGL
SPYQNKWTIRARVTVKSDVRHYSTPKGEGKIFTVTLMDDSGEIRATGFNHQVDQFYDKLE
EGKVYYVSKARVNLAKKKFSNVQNEYELMLGTETEISECADQAAAPQITYHFVKLSELGN
QEKDTTCDVIGIVKDVSDVTEIVAKATGRTIKKRELTLIDLSEFAVRMTLWGKQAESYTA
EEHAVLAFKGARVGDFGGRSLSMSNATHMSVNPDINEAHVLRGWFDSLNSPPAFKSHSGG
SSSAGGFGDIRREAMKTLLEVRALQENVPDGGENFSCRGTILHIKADNLFYPACPTCNKK
VIEGSEGWRCEKCDRAYTEPEYRFMMSMSVADHTGQVWLNGFNDVGLVVFGKTASELHEL
KERDESAYTAAIARATCNTYNFNCRAKQDTYNEQSRVRFGIQKIMPLDYKLEAGLLRDRL
KKMGL
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacatccagcttacaaccggctcaatagaaaggcttctctctgtcgcaccaggc
gacaatgagctctgggagactggccatgttcttcagctcctttcgctaaagaagattggt
gcggcgcgtgagggcgctgcgcctgaccgtttcagacttgtagtgtcggatggtgtccat
tacacgcaagccatgcttgcgacacagcttactggtatggtcgacgagggcgaaatcgcg
aagtactcggtcgtgaaagtcgaaaaactcacatgtaacaatgtgcaaaacaaaaagctc
cttatcctattagcgctcacgcctgtaggtaacccaggtgaaaaaattggtgatcccgga
tcactcgaagtccctggacagaacgcatcatcaagtacagaagcacaagcaacgcccacg
actgcagttaacacccctgttgcccaacagcaaaagtccgttcagtctcagaaacctccg
cagcagcagcagcagcagcagcgagcaaatggccctgtggtttttcctattgaagggcta
agtccatatcaaaacaaatggacaattcgtgctcgtgttacggtcaaatccgacgttcgg
cattattctactccaaagggtgagggcaagatatttactgtgactctcatggacgactcg
ggcgaaattcgggcaaccggcttcaatcaccaggtggatcagttctacgataagctcgag
gaggggaaggtctactatgtttccaaggcccgtgtaaaccttgccaagaaaaagttctcg
aacgtacagaatgaatatgagcttatgcttggcacagaaacggaaatttctgagtgtgcg
gatcaagcagctgctccacaaatcacgtaccactttgttaagttgtctgaacttgggaat
caagaaaaggatacgacttgcgatgtaatcggcattgtgaaagatgtgtctgatgtaaca
gagatagttgcaaaggcaactgggaggacgatcaaaaagcgagaactgactcttattgac
ctgtcggagttcgcggtccgtatgacactctgggggaagcaggcagaaagctatactgct
gaggagcacgctgtccttgcattcaagggcgctagggttggtgattttggagggcgttca
ctatccatgtcaaatgctacccacatgtccgtcaatcctgatattaatgaagcgcacgtt
ctccgtggatggtttgattcactgaactcgcccccagcattcaagtctcactctggtgga
agctcctctgcaggtggattcggtgacatcaggagggaggcgatgaaaactctcttagaa
gtcagggctttgcaggaaaacgtacctgacggcggtgagaatttttcgtgcaggggaacg
attctgcacatcaaagcggacaatctattctatccggcatgcccgacgtgtaacaaaaaa
gttattgaagggagcgagggatggcggtgtgagaaatgcgaccgtgcatatacggagccc
gagtatcggtttatgatgtcgatgtcggtggcggaccacacagggcaagtgtggttgaat
ggcttcaatgacgttggtcttgtcgtgttcggcaagacggcgagcgagctccatgagttg
aaggagcgagacgaaagtgcatatactgcggcaattgcgagggcgacgtgcaatacatat
aacttcaactgccgtgcaaagcaagacacgtataacgagcaatcgcgggtgcggtttggg
atccagaagatcatgcccttagattacaagctggaagcgggattactccgtgaccggctg
aagaagatgggcctctag
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integrated database retrieval system
