Fomitiporia mediterranea: FOMMEDRAFT_110801
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Entry
FOMMEDRAFT_110801 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_110801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_110801
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_110801
Spliceosome [BR:
fme03041
]
Complex A
U2 snRNP components
U2 related factors
FOMMEDRAFT_110801
Complex B
FOMMEDRAFT_110801
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
NuDC
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
18670530
NCBI-ProteinID:
XP_007268461
JGI:
Fomme1_110801
LinkDB
All DBs
Position
Unknown
AA seq
868 aa
AA seq
DB search
MMDDVTETTRKLEKLEDMPAIDMSMPNDESVGENLEADDDDEEANKLDEEKKAMAKDRMD
VDEGDEFDPLDAFMSEVKQEVKKVDEMDLQKMMEDPNYRRRRLEDRLGEEGGDEEDVEVI
ADELDATDLNPEDILALAAKKAKKKELASVDHSRIVYEPFRKEFYRAPPEIAEMTDEEAD
LLRLELDGIKIRGIDCPRPITKWSHCGLPASCLDVIKKLGFTGPTPIQAQAIPAIMSGRD
VIGVAKTGSGKTIAFLLPLFRHIKDQRPLEPMEGPMAIVMTPTRELATQIHRECKPFLKV
LNLRAVCAYGGSPIKDQIAEMKKGAEIIVCTPGRMIDLLTANSGRVTNLKRVTYLVLDEA
DRMFDMGFEPQVMKIVGNIRPDRQTVLFSATFPKQMDSLARKILKKPLEITVGGRSVVAA
EIEQIVEVRVEETKFHRLLEILGQMYNEDPECRTLIFVDRQEAADNLLRELLRKGYLCMS
LHGGKDQVDRDQTIADFKAGFVPIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAG
RTGRAGNKGTCVTFITPEQDRYSVDLFRALRASNAKVPQELEDLANGFLEKVKAGKAHAA
GSGFGGKGLDRLDKERDAKEKAERKAYGEGDDKPEEKPEEVAGPDPAAGAVKTESKDEMT
FGNFKVEIKRGPAPDSSKGVLGVAGAAAAARRLAQAKEEEKMQSSLRAAEEAAARAGKDT
AAYKQAQSVVSKLNAQLRVARLVAQSQTAFEAKGGSVSAPDATDFHAIIPINDYPQKARW
RVTNKETMVQLIDQTGASVTNKGIYYEPGKEPPPEGPPKLHLLVESNEEWRVEQAVREIK
RLLVEASAAALQAEYRNPSGTAGRYSVV
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgatgtgacagagactacacgtaaactggaaaagctggaggatatgccagcc
attgacatgagcatgcctaacgacgaaagcgtcggcgaaaaccttgaagctgacgatgac
gacgaagaggcgaacaagttagatgaagagaagaaggcgatggcgaaggatcgaatggat
gtcgatgagggagatgagttcgaccccttggatgctttcatgagcgaggtcaaacaggaa
gtcaagaaagttgacgaaatggacttacaaaagatgatggaagacccgaactatcgtcgg
cgtcgcctcgaagatcgtttgggtgaagagggaggtgatgaagaagatgttgaggtcatc
gccgacgaacttgacgccacggacctcaatccagaagatatcctcgcccttgcggctaag
aaggcaaagaagaaggaacttgcatcggtcgaccattcacgtattgtctatgagcccttc
cggaaggagttctaccgtgctcctcctgaaatcgcagaaatgacggacgaagaggcagat
ttgctacgcctggaactagatggcattaaaattcgcggaattgattgccctcgaccaatc
actaaatggagtcactgtggactacctgccagttgtctcgatgtcataaagaaactcggc
tttaccggccctactcccattcaggcgcaggccatcccagcaatcatgtctgggcgtgac
gttattggtgtcgcgaagactggctctgggaagaccatcgcttttcttctaccactcttc
cgtcatatcaaggaccagcgcccccttgaaccaatggagggtccaatggctattgttatg
actcctactcgcgagttagcgacacagatccatcgtgaatgtaagccattcctaaaggtt
ctcaatttacgggcagtctgtgcttacggtggttcgccgataaaggaccaaattgcagag
atgaagaaaggagcagagatcatagtctgtactccaggacggatgattgacctcctcacg
gcaaactctggacgtgtaacaaacctcaagcgggtaacataccttgttcttgacgaggct
gatcgaatgtttgatatgggttttgagccccaagtgatgaaaattgtgggtaatatcaga
cctgaccgtcagaccgtgttgttctctgctacatttcccaaacaaatggattctctcgcc
cgaaaaattctcaagaaacctcttgaaatcactgttggcggacgctcagtagtggccgct
gagattgaacaaattgtggaggttcgcgtagaagaaacgaaattccaccgtttactcgaa
attctggggcagatgtacaatgaggatcctgaatgcaggacccttattttcgttgaccga
caagaggccgcggataacctactccgcgagcttcttcgtaaagggtatctctgcatgagt
ttgcacggtgggaaggatcaagtggatcgagatcaaacgatcgcagacttcaaggctgga
tttgtgcctattgtcatcgcgacgtcggtcgccgctcgtgggctggatgtaaagcaactc
aagcttgttattaactacgacgctcctaatcacatggaggactacgtgcatcgcgcaggg
aggacaggacgtgccgggaacaagggtacctgcgtcacctttatcactccggaacaggac
agatactccgtagacttatttagagcacttagagctagcaatgcgaaggtgccgcaagaa
ttggaagatctagcgaatggtttcctggagaaagttaaagccggcaaggcacatgctgcg
ggctcgggcttcggtggcaaagggctcgatagattggataaagagcgtgacgccaaagag
aaggcggaacgtaaggcttatggtgaaggcgatgacaaaccggaggagaagcctgaggag
gtggctggtcctgatcctgctgctggagcagtaaagaccgagtcgaaggatgaaatgaca
tttggcaacttcaaggttgagatcaagcgaggaccagcaccagactcttcaaagggtgta
ctcggcgttgcaggtgccgcggcggcggcgcgcagacttgcccaagctaaagaagaagag
aaaatgcagagctcgttacgtgctgcagaggaggccgcagcccgtgcagggaaagacaca
gcagcttataaacaagcgcagagtgttgtttcgaaattaaatgcacagcttcgtgtggca
cggctagtcgcgcaaagccagaccgctttcgaggcgaagggcggatccgtcagtgctccc
gatgcgacagacttccacgctatcattcccatcaacgactatcctcagaaagcgagatgg
cgtgttactaataaggagactatggtgcagctcattgaccagacgggagcctcggttaca
aacaaaggtatatactatgagcccgggaaagagccgcctccagaaggtcctccaaaatta
catctgctcgtcgaatcaaatgaggaatggagggttgagcaagcagtgcgggagatcaag
cgcctccttgtggaagcatctgccgccgcactgcaggcagaatatcgtaatccgtctgga
acggctggtcgctacagtgtggtctga
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integrated database retrieval system
