Fomitiporia mediterranea: FOMMEDRAFT_113382
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Entry
FOMMEDRAFT_113382 CDS
T03132
Name
(RefSeq) POP1-domain-containing protein
KO
K01164
ribonuclease P/MRP protein subunit POP1 [EC:
3.1.26.5
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FOMMEDRAFT_113382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_113382
03016 Transfer RNA biogenesis [BR:
fme03016
]
FOMMEDRAFT_113382
03029 Mitochondrial biogenesis [BR:
fme03029
]
FOMMEDRAFT_113382
Enzymes [BR:
fme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
FOMMEDRAFT_113382
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
FOMMEDRAFT_113382
Transfer RNA biogenesis [BR:
fme03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
FOMMEDRAFT_113382
Mitochondrial biogenesis [BR:
fme03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
FOMMEDRAFT_113382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
POP1_N
POPLD
POP1_C
GCV_T_C
Motif
Other DBs
NCBI-GeneID:
18670723
NCBI-ProteinID:
XP_007270749
JGI:
Fomme1_113382
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MEGLPSTIDVEKFAEARAFEINAMQNAMDNVAAIGTQRVWQTLPRHLRRRAASHDVRRVP
ARLRQKARSEMDTPAKPASKKKLSKRGKEKTITKTEKFLKRQKDKTWLETHIWHAKRMHM
ENMWGYRLAQTPTEKSFRPSHRASLHGCILHDASYEAIIELKGPEATLKEILASCSDPQS
VGPGAIRFSNGSRICHTHMYKPKSYPFDLIGPIEVLWKADPNASSSPSTSQSQASATQKD
KQRQTSSQEVRVRTLWIRCHPLIYDEVMSTIKYSVQARLQMAQNSGNEDVEIEMADLRDQ
FNIFELVGPKSSQVIHGALTPVKDESRDEFKKLWKALGQLQTAGSAPRGMVVGFKVLDPR
LNFPPKNTKVAIDDKSNVPVGFWPTAKLAASDMWNDDFRAKLSKPRFKKKDIDARKSKHL
IPGSKLNPLRQDNRIPVLLIQRSIESHGISTPSSSLPSSSQTSSSSSSRPLHGWTLIIPK
GWGMPFFSSLTHTGTRVAGQREIPTQRFEAGCTAFPFDYPCTEAYDMSVGERAKEERERW
ERKPPAKRINWEKVGTESPWIPDWEGLLGLRRKTKINEEDVEGDLVPTQRDTMDVDLPDK
TQSPKEAIEDDGTSDDIHPWLFRGPEAPSIDDSLLRSAIVGIRLSVPLSGSPENNAVIYK
VDDEEVKKWRELVEDKDGKSDFRETELSDLKPSKDLIIGYVTSGHYSLSIGRGQAVGALS
LTSYLEIKEQLHRLGKVNSLPLVKFRNKHSAICRAAFVELAS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggaaggactaccgagtacaatcgacgtggagaaattcgcagaagcgcgtgcattcgag
attaatgccatgcagaatgctatggacaacgttgcagcaattggcactcagcgtgtctgg
cagacattgccgcggcacctaagacgtcgagctgcaagccacgatgttcgacgcgtccca
gcaagactacggcagaaggcgcgctcagagatggatactcctgcaaagccggcgtcaaag
aagaagctatcaaagcgaggcaaagagaagactattactaaaaccgagaaatttctaaaa
cgccagaaggataagacgtggctagaaacgcacatatggcacgcgaaacggatgcatatg
gagaatatgtggggataccgccttgcacaaacaccaacagagaaatcattcaggccgtct
catcgtgcctccctgcatggatgtatcctgcacgatgcatcttacgaggcgatcatcgaa
ttgaaaggccctgaagcgactctcaaagaaatactcgcaagttgctctgaccctcaatcc
gttggacctggcgcaataagattctccaacggctcgcgtatatgccacacgcacatgtat
aaacctaagtcatacccattcgacctcatcggtcctatcgaggtcctttggaaagcggac
cctaacgcttcgtcatccccttcaacttctcaatcgcaagcatcagccacacagaaagac
aagcaaagacaaacatcttcgcaggaagtgcgcgtacggacattatggattcgctgccat
ccgctcatctacgacgaagtaatgtcaaccattaagtattccgtccaggcgcgcctgcaa
atggctcagaactctggaaatgaggacgtggagattgaaatggccgacctgcgcgatcaa
tttaatatctttgaactcgtaggtccgaagtcaagccaggtcattcatggtgctcttact
ccagtcaaagacgaaagccgggatgaattcaaaaagctttggaaagcacttggacaactt
cagacagctggatctgcacctcgaggaatggttgtcggcttcaaagtactcgatccacgc
cttaattttccaccgaaaaataccaaggtcgccatcgacgacaaatccaacgtacccgtc
ggattctggccaaccgcaaagttagccgcaagcgatatgtggaacgatgacttccgagcg
aaactcagtaaaccgcgttttaagaagaaagatattgatgcgcggaagtcgaaacatctc
atccccggatcaaaattaaatcctctccgtcaagacaaccgcatacccgtcctcttaatc
cagcgctccatcgaatcacacggaatctcaactccatcatcctctctcccttcgtcctct
caaacttcctcttcgtcatcctcccgtcccttgcacggctggacgctcatcatcccaaaa
ggctggggaatgcccttcttctcctccctcacccacacaggcacacgcgtggccggacaa
cgcgaaatcccgacacagcggttcgaagctggctgcactgctttcccattcgactatcca
tgcactgaggcgtatgatatgagtgtaggggaaagagcgaaggaggagcgggagaggtgg
gagaggaagcctcctgcgaagaggatcaattgggagaaagtcgggacggagagtccgtgg
atacctgattgggagggattgcttggcctaaggaggaagacgaaaataaacgaggaagac
gtggaaggagacctcgtaccaactcaacgagatactatggacgttgacttaccagacaaa
acacaaagcccgaaggaagcgatagaagacgatggaacgagcgatgatatacacccatgg
ctattcagaggccccgaagctccttctatcgacgactctctccttcgtagcgctatagta
ggcatacgactctcagttcccctgtccggatctccagagaacaacgcggtgatatataag
gtggacgacgaagaggtgaagaagtggagggaactcgtcgaagacaaagacggcaaaagc
gactttagggagactgagttgagcgacctaaagccttcaaaggacttgattataggctac
gtaacaagcggtcactattctctatctatcggacgcggtcaagccgtcggagcactttca
ttaacgagttatctcgagataaaggaacaattacatcgactcgggaaagtcaactctctc
ccacttgtaaagttccgtaacaaacacagtgcgatttgccgagctgcgttcgtcgaactc
gccagctaa
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