Fomitiporia mediterranea: FOMMEDRAFT_114902
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Entry
FOMMEDRAFT_114902 CDS
T03132
Name
(RefSeq) SNF5-domain-containing protein
KO
K11770
chromatin structure-remodeling complex subunit SFH1
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_114902
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_114902
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
RSC complex
FOMMEDRAFT_114902
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Chromatin remodeling factors
RSC complex
FOMMEDRAFT_114902
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
Motif
Other DBs
NCBI-GeneID:
18670841
NCBI-ProteinID:
XP_007271873
JGI:
Fomme1_114902
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MPPPAPPGMSSFQATLTSSNMSALTDAQLRAAVSSLSSAAAATSYSGAKGGLFEPKQYTV
PTFDSKRWQGSATPTGKTAPPRQRKVARGTPTASTPAPTTSYAQTQQAVPRPAPATLQPP
APQVARSPLPTTPQALTTTYASRLRTGATLLMQPILASTSNSTLGAGRTGTRRGGVINYA
EPDSGDEVVEPDAGEKDRDSEDSDFIASGGLRTSVRATRRIGPNGFYQYSFSGSPAPQAG
QGRLELDQSYLGMEPPSKFIKPKRAEPTRHEYPSQEALENQALKPVALVPVRVEFETDTH
RIRDCFMWDLNDDLIKPESFARIFCQDLDLPTSSWVETISNQIRAQVEEYEGLATMDLGS
SAYGYEEVNSEEAMDVDVPECRVILSIDVQIATYHLMDHIEWDLLSPLTPEAFAQQLCAD
IGLSGEGIPIIAHALHEEILKHKKDAIEWGVIGGETTSRDVQDDTPTDKDKKEKSSLKDK
TGLGLGPGAWSRPPRDGLGRGPRALKSVWKDWNEAEEYASRFEVLTAEEVERREIERERA
SRRLRRETSKFQFSSRRRR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgcccgctcctcctggcatgtcttctttccaagcgacgttgacttcctcaaac
atgtcggctcttactgacgcccagctgcgagccgcagtcagttcgttgtctagtgccgct
gcggcgacatcatattcgggcgcaaaaggcggtttatttgaaccaaaacaatacaccgtg
cctacgtttgattctaagagatggcaaggaagtgcgacgccgacgggtaaaactgccccg
ccgcgtcagcgtaaagtggctagggggacgccaacagcttcaacaccagcaccaacaacc
agttatgcgcaaacgcaacaagcagtaccgcgtcccgctccagcaacgttacaaccccct
gcaccgcaagtcgcacgatcaccgttaccaactacgccgcaagctctgacaacgacgtat
gcgtcgcggctacgaacaggcgcgactctccttatgcagcccatcctggcgtctacgtca
aattcaactttaggcgctggtcgaacaggaacacggcgcggcggtgtcatcaactatgcc
gaacctgactcgggtgatgaagtggttgagccagacgctggggagaaggaccgggactct
gaggattcagacttcattgcaagtggtggcttgcgcacgtccgtacgcgctacacgcagg
ataggtccgaatggattttatcagtactctttctcggggagtcctgctccacaggctggg
caagggaggctggaacttgatcagagttacctggggatggaacctccttcaaaattcata
aaaccgaagagggccgagccgacgcgccatgaatatccctctcaagaagcgttagaaaac
caggctttgaaaccagtcgctcttgtaccagttcgtgtcgagtttgaaacagacacgcat
cggatacgggattgcttcatgtgggacctcaatgatgatcttatcaaaccggaatcattt
gcgcgaatattctgtcaagaccttgacttgccgacttcttcatgggtagaaacgatatca
aaccaaattcgagctcaggtagaagaatatgagggattagcgacgatggaccttggttca
agtgcctatggctatgaggaagtgaattcggaagaggcgatggatgtggatgtaccggaa
tgccgagttattctgagtattgatgtacaaatcgctacctaccaccttatggaccacatt
gagtgggacctattatctcctctaacacccgaggcctttgcacaacaactatgtgcagat
ataggtctctcaggcgagggcataccaataatcgctcacgccctacacgaagaaatcctc
aaacacaaaaaggacgctatcgaatggggtgtcatcggcggagaaactacttctcgggat
gtccaagatgacactcccacagataaagataaaaaagaaaaaagctccttgaaagacaag
acaggactgggattaggtccaggagcttggagtcggccaccgcgagatgggttggggcga
ggtccgcgtgcattgaaaagtgtttggaaagattggaacgaagcagaggaatatgcgagt
cggtttgaggtacttacggcagaggaagttgagaggagggagattgaacgtgagagggcc
agtcgacgacttcggagggaaacgtccaagtttcagttcagctcgcgaagacggagatag
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