Fomitiporia mediterranea: FOMMEDRAFT_118992
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Entry
FOMMEDRAFT_118992 CDS
T03132
Name
(RefSeq) spliceosome complex protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_118992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_118992
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_118992
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
FOMMEDRAFT_118992
Spliceosome [BR:
fme03041
]
Complex B
Other components
Prp19-related factors
FOMMEDRAFT_118992
Complex C
FOMMEDRAFT_118992
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_2
NRDE-2
ARM_TT21_C
MIT
TPR_16
CdvA
Motif
Other DBs
NCBI-GeneID:
18671054
NCBI-ProteinID:
XP_007263887
JGI:
Fomme1_118992
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MPSVALLKPTLDNLKANVTLTQPVPTPLSHPELLSPGDLTREEDLLRNPSSFRHWWAAIQ
ATKETCSALQKAAPTSDIEPDVAALLGPLATPEARLSFQRLTYLYEAALVQFPGSFKLWK
SYLHLRMSYVLGKFVQKKRAGGKKKLPEMKEALEDEKEDLEQWEGGLDGVVGYEEWKSLV
ATFERALMWLPNLPRLWLLYLSIFSHPMCPAAFSHSHARHTYDRALRTLPPSLHHRIWVR
YLLWAEANGGLTCVAVYRRYLAVDPSVTERYVSILLSPSNPSPRPLEAAKLLLALARKAA
TGEYTSPEGKSPYQLLGEWLDVIEQYPEEVGVSVEQTVTNEKDKEKAAAEAAEAEKASQE
PASVDGRLIRFAGPPVAVGKDGKELRPYDEDEDPTSSRRLDVERIIRTDGLEVYKDQAGR
LWTGLATYWIKRGEFDRAKTTFEAGMAAALTIRDFTQIFDAYAEFSESLVSALMEALADP
DEDDEDDTKETEKELDERMKAFEELMDRRPFLVNDVLLRRNPNDVQEWEKRIALWGNDDE
KVAEMYTTALSTIHPKKATANLHRLFINFAKFYEEGGTTGEAERDLDSARKILEKATKVN
FRTVEDLAEVWCEWAEMELRHDNYDEAIRVMQRAAVIPKNPKISYHDHSLPVQARLFKSL
KLWSFYVDLEESIGTVDTTKAAYDKILELRIANAQIIINYAAFLEENKYYEESFKVYERG
VELFTFPVAFEIWNIYLSKFVKRYGGSKIERARDLFEQALEQCPPKFCKALYFMYGKLEE
EHGLAKRAMNIYERATQAVTDEDKFEMFTIYIAKASANFGLPATRPIYERALEVLPDKQT
AQMCLRFAQLERKLGEIDRARAIYAHASQFCDPRVLPEFWTEWYNFEIDTGSEDTFREML
RIKRSVQAQFNTEASFLAAQTIAARKGTADLAAEAEEAADPMAQAEKQATGGKGTTFVAA
AKTAVPTENAGADGEDVQAQQQNEDEIRISDDEDL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgccttcggtcgctctcctaaaaccaactttagacaatctcaaggccaatgtcacgctt
acgcagcccgtacctactccgctctctcatcctgaactcctttcgcctggcgacctgaca
agggaggaagaccttctacgcaatccttcttcgtttcgtcattggtgggcagcaatccaa
gcaacaaaggagacttgctcagctttgcaaaaggctgcgccgacatctgatattgaaccc
gatgttgccgcgcttcttggcccactggcgactcctgaagctcgccttagtttccaacgg
ttaacatacctttatgaagctgctctagtgcaattccctggttctttcaaactatggaaa
tcatatctccatctccgcatgtcctatgtattgggaaaatttgtacaaaagaaacgagct
ggtggtaagaagaaacttccggagatgaaggaagccttggaggatgaaaaagaagacctt
gagcaatgggaaggaggcttggatggtgttgtgggttatgaggagtggaagtcgttggtt
gcgaccttcgaaagagctcttatgtggctaccaaacctgccccgattgtggctactgtac
ctctcaatattctcgcatcctatgtgtccagcagcgttttctcacagccatgcacgacat
acgtatgatcgggcattgcgaaccctacctccttctttgcatcaccgaatctgggtgcgg
tatcttctctgggctgaagctaatggcggcttaacatgtgttgctgtgtatcgccggtac
ctggccgtggatcccagcgtaactgagcgctatgtttcaattctcctttcgccttcaaat
ccctcgccgaggcctctagaggccgccaagctgctccttgcgttagcccggaaagccgcg
acgggcgagtataccagtcctgaaggaaagagtccctatcagctactaggagagtggttg
gatgtgatcgagcaatatcccgaggaagtgggtgttagcgttgaacaaactgtgacgaat
gagaaggataaagagaaagccgctgctgaagccgctgaggcagagaaagccagtcaggaa
ccagcatctgtggacgggcgccttatacgatttgctggtcctcctgttgccgtagggaag
gacggtaaagaattgcgcccttacgatgaggatgaggatccgacgtcgtcacgaaggctc
gatgtagagcggataattcgtacagatggattggaggtttataaggaccaggcaggtcgt
ctctggacaggccttgcaacatattggatcaaacggggcgagtttgaccgcgcaaaaacc
acttttgaagctggcatggctgccgctctgactattcgcgatttcacgcaaattttcgat
gcgtatgctgaattctcggagtcgctcgtcagtgcgctcatggaagcgcttgctgacccc
gacgaagatgacgaagatgatacgaaagagactgagaaggaactggatgaacgaatgaag
gcgttcgaggagctcatggatcgtaggccattcctcgtcaacgatgtgctattgaggcgg
aatcccaacgatgtgcaggaatgggagaagcgtatagcattatggggaaatgatgacgag
aaggttgccgagatgtataccacggctctctcaactatccatcccaaaaaggctaccgcc
aacctgcaccgtctgttcatcaatttcgccaagttttatgaggaaggtgggacaacaggc
gaagctgagagggatctcgacagcgcccgcaaaatcctggaaaaggccacaaaagttaac
tttaggactgtcgaagacctcgcagaggtctggtgtgaatgggcggaaatggaacttcga
catgacaactatgatgaagccatccgtgttatgcagcgtgcggcggtaattccaaaaaac
ccaaagattagctatcatgatcattccctacccgtccaggctcgactgttcaaatccttg
aagctttggtcgttctacgttgatttggaagaatcaataggcactgttgacactaccaaa
gccgcctacgacaaaatccttgaattgcgcattgccaacgctcagatcattattaactat
gcagctttccttgaagagaacaaatactacgaggagagtttcaaggtctacgaacgcgga
gttgagctattcactttccctgtcgcttttgaaatttggaacatttatttgtcaaaattc
gtcaagcgatacggtgggtcgaagattgagcgtgctcgcgacttgtttgagcaagctttg
gagcaatgccctcctaagttctgcaaggcattgtattttatgtacggcaagttggaagaa
gagcatggcttggctaaacgggcaatgaatatctacgaacgtgctacgcaagccgtcacc
gacgaagacaagttcgagatgtttactatctacatcgccaaagcatccgcgaacttcggt
cttcccgcaacccgtccaatctacgaacgcgctcttgaggtgcttccagacaaacaaaca
gcacaaatgtgtctccgtttcgcccaactcgagcgcaaactcggtgaaatcgaccgcgca
cgtgcaatttacgctcatgcgtcgcaattctgcgacccacgtgttctccctgagttctgg
acagaatggtacaactttgagattgacacgggttcggaggacaccttccgggaaatgttg
cgcataaaacgtagtgtgcaggctcagttcaataccgaggcgtctttccttgctgcacag
acgatagctgcgcgcaagggcacggcagatctcgctgcagaggcagaggaggcagccgat
ccgatggcgcaggcagagaagcaggcgactggaggaaagggtactactttcgtggcggct
gcaaagacggctgtaccgacggaaaatgcgggcgcggatggggaggacgtgcaggcacaa
cagcaaaacgaagatgagattcgaatatctgacgacgaggacctataa
DBGET
integrated database retrieval system
