Fomitiporia mediterranea: FOMMEDRAFT_120792
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Entry
FOMMEDRAFT_120792 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K10755
replication factor C subunit 2/4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03030
DNA replication
fme03410
Base excision repair
fme03420
Nucleotide excision repair
fme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOMMEDRAFT_120792
03410 Base excision repair
FOMMEDRAFT_120792
03420 Nucleotide excision repair
FOMMEDRAFT_120792
03430 Mismatch repair
FOMMEDRAFT_120792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_120792
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_120792
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_120792
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FOMMEDRAFT_120792
DNA Replication Termination Factors
ELG1-RFC complex
FOMMEDRAFT_120792
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
FOMMEDRAFT_120792
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FOMMEDRAFT_120792
Check point factors
HRAD17(Rad24)-RFC complex
FOMMEDRAFT_120792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
AAA_22
RuvB_N
AAA_14
RCF1-5-like_lid
AAA_16
nSTAND3
AAA_3
Viral_helicase1
Rad17
nSTAND_NTPase5
Mg_chelatase
Gp44_lid
MeaB
AAA_assoc_2
RNA_helicase
GcpE
AAA_19
SRP54
NTPase_1
DNAX_ATPase_lid
AAA_11
KTI12
AAA_28
Motif
Other DBs
NCBI-GeneID:
18671137
NCBI-ProteinID:
XP_007265257
JGI:
Fomme1_120792
LinkDB
All DBs
Position
Unknown
AA seq
338 aa
AA seq
DB search
MAISRGKQAANEIPYELPWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPG
IGKTTSIHCLAHQMLGEAYKDGVLELNASDERGIDVVRNKIKAFAQKKVTLPPGRHKIVI
LDEADSMTSGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEIL
KRLLEICEMEQVQYNDDGLTALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPH
PILVQAMIRACMKGDINTTMEKLTELWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIK
EIGFTHMRILEGVGTLVQLGGLAARLCKMNMNPELFKL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggctatttccagaggtaaacaagccgcaaatgaaattccatacgaactaccttgggtg
gagaagtaccgacctcaaacactggacgacgttgtcggaaactctgagaccatcgaacgt
ctcaaggtcattgcgagggatggcaattgcccacatatcattatttccggacttcctggt
atcggaaagacaacaagcattcactgtctcgctcaccagatgcttggcgaagcctataag
gatggtgtgctggagttgaacgcctcggatgaacgagggatcgatgtcgttcgtaacaaa
ataaaggcgttcgctcagaaaaaggtcacccttccacctgggagacataaaatcgtcatt
cttgatgaagcggatagcatgacatctggagcccaacaagccctccgacgaactatggaa
atctactcaaacacaacgcgattcgccttagcatgcaacatgtccaacaaaattattgaa
cctattcaatcccgttgtgcaattctccgatatgcaaagctacgcgatcaagaaatatta
aagcgattgctagaaatttgcgagatggagcaggtacaatacaacgatgatgggttaaca
gccctcatattcacttctgaaggagacatgcgacaagccatcaacaacctacagtcgaca
cattctggtttcgggttcgtttcaggcgacaacgtcttcaaagtctgcgaccaaccacat
cctatcttagtacaagctatgataagggcttgcatgaaaggcgatataaatactacgatg
gagaaacttactgagctttgggatcaagggtatagtgctgtggatatagttgtgactatc
tttcgcgtggtaaagacctttgatgaacttccagaatacaccaagcttgaatacatcaag
gaaattggatttactcacatgcgaatattggaaggcgtaggcactttggtccagcttggt
ggtttggctgctcgtctctgcaaaatgaacatgaatcctgaacttttcaagctgtag
DBGET
integrated database retrieval system
