Fomitiporia mediterranea: FOMMEDRAFT_121141
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Entry
FOMMEDRAFT_121141 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
fme03012
]
FOMMEDRAFT_121141
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOMMEDRAFT_121141
Translation factors [BR:
fme03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FOMMEDRAFT_121141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
UBA_7
AAA_22
UBA_DHX29
HA2_N
nSTAND3
DSRM_DHX29
UBA_9
AAA_23
Motif
Other DBs
NCBI-GeneID:
18671156
NCBI-ProteinID:
XP_007265456
JGI:
Fomme1_121141
LinkDB
All DBs
Position
Unknown
AA seq
1430 aa
AA seq
DB search
MAPKKKKTQIKKVERGYATTSIPKKAPTAAPPAEESAEAPDTREENVEKSDAIPSVSAQD
ENVAVLQRLVDKFQEKTEKEITRTLKSIDYDKRMAKTFPLLDVDQTVVDEVIELIAAGYS
QDKLKLPDMPRDKLTSQIGITYGVLRRLGFSEELVLKCLRESSGVELEQALDWIYAHCST
DELDLQRRLDGPSEDTLLTPQTPDTSTSPGTPQEQTRVAPLPSPSLNSGSNVTASFNALK
PGERVDDFGSDEGSDIDDPNIEYARLKLRITDLTGSRRRSEETTSNEFLRKLQARLESVK
KDYFFSEKEAEAMFREKRREADEAKLLARLRGETVPSPAPPRPAKEDVETEATPKEVGLT
DDIFENSGDEDSPGGMFELLEPMPTTETTAAGTTVVVRDMALPKYWAGRTPKSLLLDFIT
KSDRHTVVTYTDLSGSSRAKRSSVHVQRTGGRTSQWAMEDVACYDLVQAEHYIATVALHS
LTYPGSDGFRISVGDPKGTQTSYRHLPPTFRELWNELEVKCKENEDRSNRNVWESLTAIL
DQRWFAPKKGEDKAVKAPLPKENSYSKERTALRLSEEQLKAEFRARQSSRPYQEMLKQRN
ALPIASYRKTVIEMLEMSPVIVLSGETGCGKSTQLPSFILEDHLSNGRHCKIVVTEPRRI
SAISLAQRVSRELGDSPGAVGTSTSLVGYTIRLESQTSKNTRLNFVTNGIALRMLEGGSS
SDGKGTAFDDVTHIVVDEVHERSIDSDFLLIVLKSLLQERRDLKVILMSATLDAEKISNY
FGGCPTIQVPGRTFPVDIRFLEDALEYTQWSISDTSLYAKRFNDRFNRNKTEWSEDIADN
AEDADDQDAIPGTVTLKGPGYSKSTVSTMNLLDERQIPYDLIVCILERVCSDPILLDMSP
AFLVFMPGLGEIRRLNDILSEHPLFGSDKFQVFPLHSTISSEDQSLVFDIPPPGIRKIVI
ATNIAETGVTIPDITCVIDSGKHREMRFDEKRQISRLIETFIARSNAAQRRGRAGRVRSG
LCFHLFSKARHESMAEHPLPEMLRLSLSDLALRIKILKVNLGSSIEDVLSNCLDPPSSIN
IQRAKNALIEVGALTTTEDITSMGRLLSKLPTDVHLGKFMLIAASFRCLDPALTIAATLN
SKSPFVTPFGLEQEADRAKKKFMTGDSDFLTLHNAFASWRKASANPGFIRKFCRQNFLSQ
QNLQQIEELRQQFMGYLVDASFIKVGKEFVRELSRSRNTRGNRTHFVPVPIEYDRNSDEN
MALLNAALAAGLYPKLLTLYNSGGRQQLHTLSNNQPVAFHPSSVNFRTRPQDFGVNYLSY
FTIMQSKRMYVWETGPVDDLAIVLLCGDCEFKLIADSVIIDRKIRYRLTPKGSVALKCLR
ANLANNLVTQFRGKELTERQMKWNELAIRLLAKTESNSARKDANNSITIQ
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctaaaaagaagaaaacgcaaataaaaaaggtcgagcgcggttatgctacgaca
tctattccgaagaaggcacccactgctgctccgccagcggaagaatcggccgaagctcca
gatactcgtgaggagaatgttgaaaaatctgacgcaataccctcggtgtccgcacaagac
gagaatgtggcggtcttgcaacgcttggttgacaaattccaggaaaagactgagaaagag
attacacgtaccctgaagtcgatagattatgacaagcggatggctaagacctttccgcta
ctggacgtcgaccagaccgttgtggacgaggtcatcgaattaatcgctgcagggtattct
caagacaaactaaagcttcccgacatgcctcgcgacaaacttactagtcagataggcatt
acatacggagtcctgcgacgtctcggcttttccgaggaattagtattgaagtgtctgaga
gaatcgtcaggcgttgaacttgagcaggctcttgactggatttacgcacattgttccact
gatgagctagatcttcaaaggcgcttggacggtccctctgaggatacgcttctcacgcct
cagactccagatacgtcaacttcgcctggtacaccacaagaacaaactagggtggcacct
ctaccatctccttctttaaacagtggaagcaatgtcacagcatcgttcaatgctctcaag
cctggtgaacgcgtcgacgacttcgggtcagatgaggggtcggacattgacgatcctaat
atagagtatgctcggttgaaattgcgcatcaccgacctgacgggtagccgaagacgcagc
gaagaaactacgagcaacgagtttcttaggaaacttcaggcccgcctcgagagcgtcaaa
aaagattacttcttcagtgaaaaggaagcggaagcgatgtttcgggaaaaacggcgcgag
gcagatgaagcaaaactgcttgcacgtcttcgtggagagaccgtccctagtcctgcccca
cccagacctgcgaaggaggatgttgaaacggaagcgactcctaaagaagttggtctgact
gacgacatattcgaaaattcaggggacgaggattcacctggtggaatgtttgagctccta
gaaccgatgccgaccacggaaaccaccgctgcgggtactacggtcgttgtaagggatatg
gcattgcctaaatactgggcgggtcgaacaccaaagtcgttgctcctggatttcatcaca
aagtcggatcgtcacacagttgttacatacactgatttgtcggggagcagcagagcgaag
aggtcgtcagtacatgtacaacggactggcggtcggaccagccaatgggcgatggaagat
gtggcatgttatgaccttgtacaagcggagcattacattgctactgtcgctctgcactcc
ctcacgtacccaggtagcgatggtttccgaatctctgttggggatccgaaaggcacgcag
acgtcatataggcatctaccacccacatttagagagttatggaatgagcttgaggtgaag
tgtaaagaaaacgaggatcgatcgaacagaaatgtatgggaatctctgactgcgattttg
gatcagagatggttcgcacctaaaaaaggagaggacaaggctgtgaaagctcctctaccg
aaagagaattcatactcaaaggagcgtactgcactccgcctttccgaagaacagctaaag
gcagagttccgcgcgcgccaatcaagtcgaccttaccaagagatgttgaaacaacgtaac
gcacttccaatcgcatcttatagaaaaacggttatagaaatgctggaaatgtctcccgtc
attgtcctgagtggtgaaacagggtgtggaaaatctacccagctgccaagtttcatcctc
gaggaccacttatccaatggccgacactgcaaaatcgtcgtgacggaaccccgccggatt
tccgctatctctttggcgcaacgggtgtccagagagctaggtgattcccccggagccgtg
gggacaagcacctctcttgtcggctacactattagacttgaaagccagacttcaaagaac
acgcgactaaatttcgttacaaatggaattgctctaagaatgctcgaaggagggagcagc
agtgatggtaaaggcacggcattcgatgatgttacgcatatcgtcgttgatgaggtgcac
gagcgaagcattgactcagacttcctgttaattgtccttaagtctcttcttcaagagcga
cgagacttgaaagtcattctcatgtccgcgacgctggatgctgaaaagatttctaattat
tttggtggatgtccaacgatccaagtgcctggacgtacattcccagttgatattcggttc
ttggaggatgctctggaatatacgcagtggtcaatttcggacacgtctctatatgcgaag
agatttaatgacaggtttaatcgtaacaagactgaatggtcagaagatattgcggacaac
gccgaagacgcagacgaccaggatgccattccgggaacagtgacattaaaagggcccggt
tattcaaaaagcactgtttcaacaatgaatcttctagacgagaggcagattccttatgat
ttgatcgtttgcatattggaaagagtatgcagtgaccccatcctcttggacatgtctccg
gcattcctagtttttatgcccgggcttggggaaattcgtcgtctcaatgacatactctca
gagcatccactttttggctcagacaaattccaggttttcccactgcattctacaatttca
agtgaggatcaaagcttggtattcgatattcctccaccgggcatccggaaaattgtaatc
gcgactaacattgcagagactggggtaaccattccggatattacttgtgtaatagattcg
ggaaaacaccgtgaaatgagattcgatgagaaacgccagattagccggcttattgaaacg
ttcattgctcgaagcaatgcagcacaacggcgcggccgtgcaggtcgagtacggtctgga
ttatgtttccatttgttctcaaaggcaaggcatgagtcgatggcagaacatccgttacct
gagatgctgcggcttagtctatctgatctggctcttcggatcaaaatcctaaaggtcaat
ctcgggtcctcgatcgaagacgtcctttccaattgtctggaccctccttcgtcaatcaac
attcagcgtgccaagaatgccctgatagaggttggagcgcttacaacaacagaggatata
acgtccatgggccgccttctgagcaagctgcctacagacgtacacctcggaaaattcatg
ctaattgccgcatcattccgctgccttgatcctgcactcacgattgcggctactttgaac
tcaaaatcccccttcgtcacaccatttggtctcgaacaagaagcagatagagctaagaag
aagttcatgacaggggactcagatttcttgactctgcacaatgcttttgcaagctggcgg
aaagcatcagctaatccgggttttattcgcaagttctgtcgacagaacttccttagtcaa
caaaacctgcagcaaattgaagaattgcgtcagcaattcatgggataccttgtagacgct
tcgttcatcaaggttggcaaggaattcgtccgtgaattaagccgttcacggaatacgagg
ggtaaccgaactcactttgtacctgttcctatcgagtatgatcgaaacagtgacgaaaac
atggctctcttaaatgccgctcttgctgctgggctgtatccaaaactgttgactctctac
aactcaggaggccgccagcagctgcatactttgagcaacaatcaaccagttgcgttccat
ccctcttcggtcaattttaggacacgtcctcaagacttcggagtaaactacttgagctat
ttcacaataatgcaatcaaagagaatgtatgtttgggaaaccggaccagtagacgaccta
gcaattgtgcttctctgtggtgactgcgaattcaagctcatcgccgatagcgtaatcata
gaccgtaaaattcgatatcgcctaacgccgaaaggaagtgttgctttgaagtgccttcgt
gcaaacctcgcaaacaacttggtgactcagtttcggggaaaggagttgacagaacgccag
atgaagtggaacgagttggcgatccgtctattagcgaagacggagagtaactcagcacgg
aaagacgcaaacaacagtatcacaatccaatga
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