KEGG   Fomitiporia mediterranea: FOMMEDRAFT_121449
Entry
FOMMEDRAFT_121449 CDS       T03132                                 
Name
(RefSeq) TFIID and SAGA subunit
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
fme  Fomitiporia mediterranea
Pathway
fme03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    FOMMEDRAFT_121449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_121449
   03036 Chromosome and associated proteins [BR:fme03036]
    FOMMEDRAFT_121449
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     FOMMEDRAFT_121449
   Coactivators
    SAGA/TFTC/STAGA complex
     FOMMEDRAFT_121449
Chromosome and associated proteins [BR:fme03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     FOMMEDRAFT_121449
    STAGA complex
     FOMMEDRAFT_121449
    TFTC complex
     FOMMEDRAFT_121449
    SAGA complex
     FOMMEDRAFT_121449
    SLIK complex
     FOMMEDRAFT_121449
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 TFIID_NTD2 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR55 ANAPC4_WD40 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_HPS5 ELYS-bb
Other DBs
NCBI-GeneID: 18671168
NCBI-ProteinID: XP_007265606
JGI: Fomme1_121449
LinkDB
Position
Unknown
AA seq 756 aa
MVLDFLRQRGHADAERALREALGLPSPPTDSDANASPEPAQPTVSDAELRKHLVPFWQKN
DKPGENALADAKVTMQSLKSGGVTTPSVSQLLETIKPGGADEILSLDPTDKHEGFRDLET
WVDGSLDMYRPEFRPILFPIFCQFYLDLIQLGFRDASLEFFKKFSPSLAPWHSKTLHRLS
TLLLPSHVQQDELAQRFRNEKYVLRMSRSGFNLLVGWLTEGVGGEGTGVGEGFTGERGKR
GRAAIMRVVNNHLQFDVTSSSTTVVPSYAWEESTGLLSSVVPQSAGATDKRALVDAAAYN
ASKGDVKLGPPPIDEGLQSEVERFYREQVLAGSERELTAQDLRPSTSSDLISPQPSDMPP
LPPSFKTMDVKREVERIRDARKKIKLEPSALTLEKDSSSPQAAAARARALPSICCYTMTD
VGDGVPCSTFSQDSSLMAVGFAESYIRLWNLKQEKLRGMRTSHLRKTREREAGTTRKLIG
HSGPVYSLSFDPLSGSAAPPQYLLSSSADCTVRLWSMEDMSNVVAYRGHQSPVWDVQWSP
LGVYFATGSRDKTARLWSSDRISALRIYAGHLSDVDCVKFHPNSLYLATGSSDWTCRLWD
VQKGTAMRVFIGHQGPITSLAMSPDGRYLASAGEDLAINLWDLGSGRRVKKMTGHTASVY
SMAFSSESSLLVSGGADWTVRCWDVKGSGGSTSRTGPRENGIVNGVDGALSRKDHAEEDG
METSDLLATFPTKRTPIINVQFTPRNLCLVSGPSLP
NT seq 2271 nt   +upstreamnt  +downstreamnt
atggtgcttgacttcctgcgccaacgaggacatgctgatgcggaacgtgctcttcgagaa
gcattgggactacctagtccccctaccgacagtgatgccaacgcttcccctgaaccagct
caaccgacggtgtcagatgcagagctgcgaaaacatctcgttccgttttggcagaagaac
gacaaacctggtgagaatgccctcgctgacgccaaggtgacgatgcagagcctcaagagc
ggtggggtgacaacaccgagtgtctctcaactattggaaacgatcaagcctggtggagca
gatgaaatcctttcactcgatccaacagacaaacatgagggattcagagatttggagacg
tgggtggatggttctctggacatgtatcgtcctgaattcagacctattctattccccatt
ttctgtcaattctatctagacttaattcagctcgggtttcgcgatgctagtctggagttc
ttcaagaagttctctccatctctggctccttggcatagcaaaacattgcaccgactttcc
acccttctacttccatcgcatgtacaacaagatgaattggcccaaaggtttcgcaacgaa
aaatatgtattgcgcatgagtcgatctggcttcaacctactggttggctggttgacagaa
ggagttggtggagaaggtactggtgtaggtgaaggatttactggtgaaagggggaagcgt
ggtcgcgcagcaataatgagagtcgtaaacaatcacctgcagttcgacgttacctcatcc
agtacgacagtagttccttcatatgcttgggaagagtctacgggattgctgtcctcggta
gttcctcaatcagcgggggcaaccgataaacgagccttagtagacgcagctgcctacaat
gcatcaaagggcgatgtgaagcttggtccccctcctattgacgagggtctccagagcgaa
gtagagcgtttttatcgagagcaagtgttggctggttcggaacgtgaattgacagctcaa
gaccttcgtccttcgacttcctctgatctcatttctccgcaaccatctgatatgccacct
ttaccaccaagtttcaagactatggatgtaaagcgggaagtagagcgtatccgcgacgcc
cgaaaaaagataaagctcgagccatctgcattaacccttgaaaaggatagcagtagtcct
caagctgctgcagcacgagcaagggctctgcccagcatttgttgctatactatgactgat
gttggagatggcgttccatgctcaacattttcccaagattcctccctaatggccgttgga
tttgcggaaagctacattcgtctttggaacttaaagcaagagaagctgagaggcatgcgc
acttcgcacttgagaaagacccgtgaaagggaagcagggacgacacgcaagctaatagga
catagtggccctgtgtattctctctcatttgatccactcagtggctccgcagcgcctccg
caatacttactatcttcgtcggctgactgcacggtccgattatggtctatggaggacatg
agcaacgtagttgcgtatcgcggtcaccaaagtcctgtgtgggatgtacagtggagcccc
ttgggtgtctacttcgcgacggggagtcgagataaaactgcgaggctctggtcatcggac
cgaatatctgcattgcgaatttatgcaggacacttaagtgatgttgattgcgtgaaattt
catccaaactcgctgtatcttgcaacgggttcaagcgactggacttgccggctgtgggac
gttcaaaagggtacagctatgcgtgtctttattggacaccagggaccaataacttcgctt
gcaatgagcccagatggccgctatctggcgagtgcaggggaggacttggccatcaacctt
tgggacctgggttctggccgtcgagtgaagaaaatgacaggacacacagcatctgtgtat
tccatggcattcagcagtgaatcctcactccttgtctctggtggtgcagattggactgtg
cgctgctgggacgtgaagggatctggaggttccacgagccgaacgggtcctcgagaaaat
ggtatcgtcaatggtgtggacggtgctttaagcaggaaagaccatgctgaggaggatggg
atggaaacgtctgacctactcgccacgttcccgacaaaacggactccgattattaatgta
caatttacaccgcgtaacttatgccttgtatcaggaccttccttgccatga

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