KEGG   Fomitiporia mediterranea: FOMMEDRAFT_123239
Entry
FOMMEDRAFT_123239 CDS       T03132                                 
Name
(RefSeq) Metallo-hydrolase/oxidoreductase
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    FOMMEDRAFT_123239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_123239
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_123239
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     FOMMEDRAFT_123239
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     FOMMEDRAFT_123239
    U7-dependent histone pre-mRNA processing factors
     FOMMEDRAFT_123239
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_3
Other DBs
NCBI-GeneID: 18671261
NCBI-ProteinID: XP_007266772
JGI: Fomme1_123239
LinkDB
Position
Unknown
AA seq 826 aa
MSDYPTLSVTMLGAGQEVGRSCCVIQYRGKTVVCDAGTHPAHNGMSALPFIDDLDWSTVD
AILVTHFHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQDFMRISSTSTDGLF
TSVELSMSLASIMTVSAHQLITVSPGLSFTPYHAGHVLGACMFLIDIAGLRILYTGDYSR
EEDRHLVKAEIPPVRPDVLIVESTYGVQGHEERDTKEHRFTNLVHSIIRRGGHALLPVFA
LGRAQELLLILEDYWKKHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNIRSRFAKRDN
PFVFKHVSNIPQVRGWEKRIAEGPPCVILCTPGMLQPGPSRELLELWAPDPRNGLIITGY
SVEGTLARDIVNEPQEIPSVKGDSIPRRLSVDYISFSAHVDGPQNIEFIEQVKAQHIVLV
HGDAAAMNRLRVSLQQRYKDREEEIKIHTPRNLETLKLTFRGERVAKAIGTLASNPPKPN
SVLSGLLVSKDYSYTLLDPRDLRDFAGLSTCIVTQRQKVVLNVGWELVRWHLEGMYGGVE
EGLDSDGVPTMRVMGAVDVKHTQEHELTLEWESSASNDMIADSCLALIIGIDTSPASVKL
TTHPHNHDKPHPHADDPENENSMIVRIQRLAMFLEAHFGEVELHMPEAPPVAGEDGSTDN
ADSPGLLIGMDDAEAFVDLATMTVESSSEQLRKRVESVLDMALTTVSSLSELYTSEAPLV
QVIGEPELVKEKSASLGIIEEERSDLPATEGQAEDVDVSHKDAVGGKEMQEDNGATAEGE
KDVMEPQSQETADVPPHSQTEPEADEGSGSEGEGTEDDDSELQVHA
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgtcggactatccaacgctgagcgtgacgatgctgggggctggccaggaagtcgggcgc
tcgtgttgtgtcattcaatatcgtggaaagacagtcgtttgtgatgctggcacacaccct
gcgcataatggcatgtcagcgctgcccttcattgatgaccttgactggagtactgttgat
gcaatcctcgtgacccattttcatattgaccatgcagcatcgctcacgtacattatggaa
aaaactaactttagagacggaaagggaaaggtgtacatgacgcatccaacaaagggtgta
taccggttcttaatgcaggactttatgcgaataagttcaacgtcaactgacgggctcttc
acttcagtagaactctctatgtctctggcgtctatcatgaccgtctctgctcatcagtta
atcaccgtcagtcctggtctttcttttactccgtaccatgctgggcacgtcttaggcgcc
tgcatgttcctaatcgatatcgctggtctgagaattctctacactggcgattattcgcgg
gaagaggaccggcatttagtcaaagcagaaattccgccagtaagacccgatgtactaatt
gtcgaaagtacatatggagttcaaggtcatgaagagcgagacacgaaagagcaccgtttc
acgaatcttgtccattcgatcattcggagaggtggacatgctctcttgcctgtttttgca
cttggacgcgcacaggagcttctccttattcttgaagattactggaagaaacacccggat
ttgcataacgtgccaatttactacgcatctaatttggcaaggaaatgcatggcagtttac
cagacctacattcacaccatgaactcaaatattcgttcaagattcgccaagcgtgataac
cctttcgttttcaagcatgtttctaatataccccaggtccgcggttgggaaaaacggatt
gctgaagggccgccttgtgttatactctgcacccctggtatgcttcaacctggacctagt
cgtgaactgctagaactctgggcacccgatccgcggaatggtctgattatcactggttac
tctgtggaaggaacactggcaagggatattgtcaacgaacctcaagaaattcctagcgtc
aagggagactctattccacgccgattatctgtcgactacatctcgttcagcgcccacgtc
gatggtcctcagaatatcgaattcatcgaacaagtcaaggctcagcatattgtgttggtt
catggagatgccgcagcgatgaatcgattacgggtctcgttgcagcaacgatataaagac
cgtgaagaggagatcaaaattcacaccccgcgcaatttggagacgttgaagctaactttt
agaggtgaacgagtcgcaaaggccatcgggaccctcgcttccaacccgcccaaaccaaat
agtgtactttcgggtcttcttgtttctaaggattattcatatactcttctcgatccacgc
gacttgcgggatttcgctggtctctcgacttgtatcgtgactcagcggcaaaaagtcgta
ttgaacgtaggttgggagctggtacgatggcatttagaagggatgtacgggggcgtggag
gagggtcttgatagcgatggtgtaccaaccatgagagtcatgggcgcagtcgatgtcaag
catactcaggaacacgagcttacgttggaatgggagtcaagcgcaagcaatgatatgatt
gctgattcttgtttagctttaataattgggattgatacaagccccgcttctgtaaaattg
actacacatccgcataatcacgacaaaccacatccacacgcagacgaccctgaaaatgaa
aattcaatgattgtacgaatacagcgactcgcgatgttcctcgaagcgcatttcggtgaa
gttgagctgcacatgcctgaagcaccacctgtcgccggtgaagatgggtcgacggacaat
gcagattctccgggactgttgatcggtatggacgatgcagaagcctttgtggaccttgct
acgatgactgttgagagctcaagcgagcaacttcgaaagcgcgtcgagtcggtcttagac
atggcactaacgactgtcagctccctatccgaactctacacctctgaagcaccgcttgta
caagtaatcggggagcccgagcttgtcaaagagaaaagtgcgagtcttggcatcattgaa
gaggaaagatccgaccttccggctaccgaaggacaagcggaagacgtggatgtttcacac
aaagatgctgttggtgggaaagaaatgcaagaggacaatggtgcaactgccgagggtgag
aaggacgtaatggagccacaatcacaggaaactgctgatgtaccgccgcactcacaaacc
gagccggaagctgatgaagggagtgggtcagagggtgaagggactgaagacgatgactct
gaattacaagtgcatgcctaa

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