Fomitiporia mediterranea: FOMMEDRAFT_124714
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Entry
FOMMEDRAFT_124714 CDS
T03132
Name
(RefSeq) polyadenylate binding protein
KO
K13126
polyadenylate-binding protein
Organism
fme
Fomitiporia mediterranea
Pathway
fme03015
mRNA surveillance pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FOMMEDRAFT_124714
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_124714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_124714
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_124714
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
FOMMEDRAFT_124714
mRNA cycle factors
Stress granule specific factors
FOMMEDRAFT_124714
Spliceosome [BR:
fme03041
]
Complex C
Other components
Complex C specific factors
FOMMEDRAFT_124714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_10
RRM_RdRP1_2
RBD_DEAH11
RRM_occluded
RRM_3
RRM_YTH1
YflT
RRM_fung
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
18671324
NCBI-ProteinID:
XP_007267754
JGI:
Fomme1_124714
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MSAPVVAAPAPPQEHTPIPAQDGAAPAPQVVQPPAPVHASMPYSVPPASGASTPSASLYV
GELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYS
LIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDEN
GRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQFTNLY
VKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHDT
ELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEF
EPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREV
RRQQLESQIAARNNFRMQQAAAAGIPNAYLNGPIYYPPGPGGYPQGRGMMGYGGPQPGIM
PPRPRYAPNGQGMPMPPYGQGPPQGYGPVPSYGPRGGPRGGPTNASRVGPGQSPPGPGPA
PLRGGPAPNGASVRPSVPPGPSVVPNRVPPAGAPAPRPQAYSKAGVPPPRGAPAPVQGGP
ATPATGAEASAGEADVPQITPQALAAATPMQRKQLLGEALYMKIVLMEEELAGKITGMLL
EMEDDELMGLLDSQEALTGKVNEAIAVLNDFAVKESVQAAA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctcccgttgtcgccgcccccgccccgcctcaggaacatactcccatccccgcg
caagatggcgccgcgccggctccgcaggtcgtgcagccgcctgcgcccgtccacgcatcg
atgccatacagtgtacccccggcatccggcgcatctacgccgtctgcctccctctacgtt
ggggagctggactcgaccgtcaccgaagcaatgctttttgagatctttaacatgattgga
cctgttgctagcatccgcgtttgccgtgacgcggtgacgcggcgctcgcttggctacgcg
tatgtcaactatctcaatgccgcggatggcgagcgtgcacttgagcagttgaattattct
ctcattaaaaatcgcgcttgccgcatcatgtggtctcagcgtgatccagctttgcgcaaa
actggtcagggtaatatcttcatcaagaaccttgatgagcagattgaccacaaggctctt
cacgacacttttgctgctttcggaaatgtactttcttgcaaagttgcgaccgacgagaat
ggccgatcccgtggctttgggtttgttcattacgacaccgccgaagctgccgatacagct
atcaaggccgttaacggaatgctgttgaacgacaagaaagtctttgtcggccattacatt
tccaagaaggagcgtcaggcacatattgatgagcaaaagtcccagttcacaaacctctac
gtgaagaatctcgatactgaagtgacggatgatgaattcaatgacatgttcgcgaaattc
ggcgaagtcacgtctgctgtcgttcagaaggatgaagagggcaagagcaagggctttggc
ttcgttaatttcaaggaccacgagagtgcacaggcggctgtcgacgcgcttcatgacact
gagctcaatggcaagaagctcttcgtgactcgtgcgcagaagaaggcggaacgtgaagag
gaattacgcaagtcgtatgagcaagcgaaaatggagaagcttagcaagtatcagggcgcc
aatctctatatcaagaatctcgaagacgacatggatgatgacaagcttcgtgccgagttc
gagccgttcggtactattacgagctgcaagatcatgcgggatgagaagggcacctctaag
ggtttcggcttcgtatgttattcgtctcctgaagaggcgacaaaagcagttgcggagatg
aacaacaagatgcttggctcgaagccattgtacgtctcgcctgcgcagaggcgcgaagtc
cgtaggcagcagcttgagtcacagatcgccgcacggaacaactttaggatgcaacaggct
gctgcagcgggtatcccgaacgcataccttaacggaccgatatactatccccctggccca
ggaggctatcctcaaggtcggggcatgatgggttatggcggcccacaacctggcatcatg
ccgcctcgtccgcgttacgcgccaaacggtcagggaatgccaatgccgccttatggtcaa
ggtccgccccagggctatggacccgttccgtcttacggaccccgtggtgggcctcgtggt
ggtcccactaatgcatctcgtgtcggccctggacaatcccctcctggtccagggccagca
cctcttcgtggtggacccgctcctaacggtgctagtgtgcgccctagcgttccaccaggt
cccagtgtcgttccaaatcgtgttcctcccgcaggtgcacctgcccctcgcccgcaggca
tattccaaggcaggcgtgcctccacctcgtggtgcacctgcacctgtccaaggcggccca
gcgactcctgccacaggtgctgaggcatcagctggggaggcagacgtcccgcaaatcaca
ccccaggcccttgccgccgcaacgcctatgcagcgtaagcagctgcttggcgaagcactc
tacatgaagattgttctgatggaggaggagcttgctggcaagatcaccggcatgttgctt
gagatggaagatgacgagttgatgggtctgctcgattcgcaggaggctttgacaggcaaa
gtcaatgaggcgatcgctgtgctgaacgacttcgccgttaaggagtctgttcaagcagca
gcttaa
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