Fomitiporia mediterranea: FOMMEDRAFT_125132
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Entry
FOMMEDRAFT_125132 CDS
T03132
Name
(RefSeq) DNA replication factor C, large subunit
KO
K10754
replication factor C subunit 1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03030
DNA replication
fme03410
Base excision repair
fme03420
Nucleotide excision repair
fme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOMMEDRAFT_125132
03410 Base excision repair
FOMMEDRAFT_125132
03420 Nucleotide excision repair
FOMMEDRAFT_125132
03430 Mismatch repair
FOMMEDRAFT_125132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_125132
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_125132
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FOMMEDRAFT_125132
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FOMMEDRAFT_125132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
nSTAND3
AAA_30
AAA_22
AAA_19
RuvB_N
AAA_assoc_2
AAA_5
AAA_16
NTPase_1
AAA_18
AAA_14
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
18671348
NCBI-ProteinID:
XP_007268020
JGI:
Fomme1_125132
LinkDB
All DBs
Position
Unknown
AA seq
967 aa
AA seq
DB search
MSPVASQTGTSKDSGPGGKDIRSFFGGTGGSSSMSAKQRNAQPNPAKHSLSSPKAPRPAI
QILESTSIEIDGDNKPQTKVRNASAKRKAVLISSDEDEGELKITPPKKKSALPRKGHVSV
KSGVISSDGEEDEPKKKSATVRSPTKKGLDHKAPGKPRVSASKGRKHKTDDDDFEDEMSD
EDNDFIVSEKAKPVKAKSGSTKVKTSIRKVDGDDTKDTKKSEAANAPKQKPNWIAKKAAR
SAGPAAPGSKPIPDGAPNCLAGLSFVFTGELSSLSRDEAVDLAKRYGGRVVLQPSSKTSY
VVVGDNAGPSKLAAIDKHKLRKINEDEFLDLIATRSSDDADDKTKTKLAKEEAEMRRAAE
EMARAERKAEKERAKAIMSAASGGGTARVKPPVDMRSQLWTVRYAPKMLKEICGNKGQVE
KLQLWLQDWSSSLKSSFKKPGKNGMNIFRAVLITGPPGIGKTTSAHLCAKLAGFTPIELN
ASDARSKKLVENSTNIANTSLDGWMSGKRTTPKTVNATGIEISDKSCLIMDEVDGMSAGD
RGGVGALNSLIKKTKIPIICIANDRNAQKLKPLLNTTFNLSFRKPDAAAVRSRIMTIAFK
EKMKIPANVVDQLVQGAQSDIRQVLNMLSTWKLSSSSMDFDEGKNLAKINEKYTIMTPFN
VTSKMLGPYLFSSTARETLGDKMELYFHDHAFVPLFIQENYLKTEPARLRAHDGREKGLQ
HLRLMDKAASSISDSDLVDSLIHGPEQHWALMPLHAVISTVRPASFLYGTGSGYGGPNAM
SFPQWLGQNSKRGKLTRQLGDVQIRMRLKVSGDKPEIRQHYIPSLFPRLVKPLIDVGTSA
VDEIIETMDDYYLSKEDWDTIIELGVDTHKDEFVLKKISTSTKTALTRKYNSTDHPVPFH
KAQEFGKAPKKLATEPAPDLEEAFDLDEGVDEEPESKDEDEDISKDSLIKTGRKGKGKAK
VTGKSKK
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccagtagcaagccaaacaggcacgtcaaaggactctggaccaggcggaaaagat
atccgatcattctttgggggtactggtggaagttcttctatgagtgcgaaacagaggaac
gcacaaccgaatcctgcaaaacattctctttcatctccgaaagcccccagacctgctatt
cagattctggagagcaccagcattgaaatagatggagacaacaagcctcaaaccaaggtc
agaaacgcttcagccaaacggaaggcagtcctgataagcagtgatgaggacgaaggtgaa
ttaaaaataacacctcccaaaaagaagtcagcattgccacgaaagggccatgtgtctgtg
aaatcgggagtcatcagcagtgatggagaagaggatgagccgaagaagaagtctgctact
gtccgctcaccgacgaaaaaaggacttgaccataaggcacccgggaagcctagggtgagt
gcctcgaaggggcgaaaacacaagacggacgatgacgactttgaagatgagatgagcgac
gaggataatgatttcattgtatcagaaaaagcaaagccggttaaagcgaagtcaggttcg
acaaaagtgaaaacttctattcgtaaagtagatggagatgatacgaaggatacgaagaaa
tcggaggcagcgaatgctccgaaacaaaagcccaactggattgcaaagaaagccgcacgg
tccgctggtcccgcagctccaggatccaagccaattcctgatggtgcaccaaattgtctt
gcaggcctctcgttcgtctttactggtgaactttcgagcctctctcgtgacgaggctgta
gatctcgcaaaacggtacggtgggcgtgttgttcttcagccatctagcaagacgagttac
gtagtcgtcggagacaatgcagggccgtccaagctcgccgcaatcgacaagcacaagctc
cggaaaatcaacgaagacgagttcttagacttgatcgcgactcgttcgagtgatgacgcc
gacgacaagacaaaaacgaagttggccaaggaagaagcagagatgcgcagggctgcggaa
gagatggctcgcgctgagcggaaggcagagaaggaacgggctaaggcaatcatgagtgca
gcctcgggaggtggtacagcgagagtaaagccacctgtagatatgaggtctcaactgtgg
actgttcgatatgctcctaagatgctgaaggaaatctgtggtaataagggccaggtcgag
aagttgcagttatggctgcaagattggtcgtcgagcttaaagtcaagcttcaaaaagcca
gggaagaatggtatgaacatcttccgcgcggtgctgattacgggccctcctggaatcggg
aagacaacgagtgcccatctttgtgcaaagctggcaggtttcacgcctattgaactgaac
gcaagtgatgcacgaagtaagaagcttgttgagaacagcacaaacatcgccaatacatct
cttgatggctggatgagcggcaaaaggaccactcccaagaccgtgaatgcaactgggatt
gaaatttcggataagtcttgcttgattatggatgaagtagatgggatgtctgctggcgat
cgtgggggcgttggtgccttaaattcactgataaagaagaccaagatcccgattatctgc
atagcaaacgatcgtaatgcccagaaactgaaaccattgttgaatacgacgttcaatctg
tcattcagaaaaccggatgcagctgcagttcgctcgcggataatgacgattgcattcaag
gagaaaatgaaaattccggctaatgttgtcgatcagttagtccaaggtgcacagtcggat
atccgacaagttctaaatatgctctcgacgtggaagctctcaagctcttccatggacttc
gacgagggcaagaatctcgcaaagattaacgagaaatatacgataatgaccccattcaac
gtgaccagcaaaatgctcggaccctatcttttctcgtcgactgcgagggagacattaggt
gataagatggagctatatttccacgaccatgcattcgttcctctcttcatacaggaaaat
tacttgaaaactgaaccagccagattgcgagcccacgacggtagagagaagggactacaa
cacctacgactcatggacaaggcagcttcgtcgatctcagattccgatcttgtcgactcg
cttattcatggtcctgagcagcactgggcattgatgccattacatgccgtcatatcaact
gtacgtcctgcatcattcctatatggaaccggttcaggctatggcgggccaaatgctatg
tccttccctcaatggctcggccaaaactcgaagcgaggcaagcttactcgacaacttgga
gacgtgcaaatccgcatgcggttaaaggtctcaggcgataaaccagaaatccgacaacac
tatataccatcgctgtttccgcggcttgtcaagcctcttattgatgttggtacgagcgcg
gtagacgaaatcatagaaacgatggatgactattacctttcgaaagaggactgggatacg
attatcgagctgggcgttgacactcacaaagatgagtttgtactgaagaaaatatcgacg
tcgacgaagacagcactgacgcgaaagtacaattcgactgatcaccctgtacctttccat
aaagcgcaggaatttggcaaggcgccgaaaaagctcgccacagagccagctccagacctt
gaagaggccttcgacctcgacgaaggcgtcgatgaagaacctgaatcgaaagacgaggac
gaggacatttcaaaggactcacttattaagaccggcagaaagggcaagggcaaagcgaaa
gtgacgggtaaatcaaaaaagtag
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integrated database retrieval system
