Fomitiporia mediterranea: FOMMEDRAFT_126606
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Entry
FOMMEDRAFT_126606 CDS
T03132
Name
(RefSeq) DEAD-domain-containing protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
fme03015
mRNA surveillance pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_126606
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_126606
03015 mRNA surveillance pathway
FOMMEDRAFT_126606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_126606
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_126606
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_126606
03012 Translation factors [BR:
fme03012
]
FOMMEDRAFT_126606
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_126606
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FOMMEDRAFT_126606
mRNA cycle factors
Stress granule specific factors
FOMMEDRAFT_126606
Spliceosome [BR:
fme03041
]
Complex C
Other components
EJC/TREX
FOMMEDRAFT_126606
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
90S particles
Helicases
FOMMEDRAFT_126606
Translation factors [BR:
fme03012
]
Eukaryotic type
Initiation factors
eIF-4
FOMMEDRAFT_126606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
TniB
Gp6_2nd
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
18671428
NCBI-ProteinID:
XP_007268846
JGI:
Fomme1_126606
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MAGLNTGDEKLVFESSEAVSVISTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIVQG
RDVIAQAQSGTGKTATFSISILQSIDVTLRETQALVLSPTRELATQIQSVLLALGDYMNV
QCHACIGGTSIGEDIRKLEHGQHVVSGTPGRVFDMIRRRTLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVILSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGIKQFF
VAVEREDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRAANFTVSSMHGEMPQKE
RDAIMAEFRAGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQYYGTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggccggccttaatacaggggacgagaaactcgtctttgagtcatcggaagctgtttct
gtcatctcgaccttcgacgaccttgggttgaaagaagacttgttgcgtggaatttatgcc
tataacttcgaaaaaccatctgccattcagcagagggccattttaccaattgtccaaggt
cgcgacgtcattgcgcaggcccaatccggtactggtaaaacggcaacattttcaatttcc
atcctccagtcgatagacgtcacgttacgtgaaactcaggctctcgttctatctccgact
cgtgaactggctacccagatccagtctgtccttctcgcactaggagactacatgaatgtg
caatgccacgcttgtattggaggcacatccattggagaggatattcgcaaattggagcat
gggcagcacgtcgtttcggggactccaggccgtgtcttcgacatgattagaaggcgtact
ctgagaacgcgtaatataaagatgctggttttggatgaagccgacgagctgttgaataag
gggttcaaagatcagatttacgacgtataccgatatcttcctccggcgacccaggtcgtt
attctcagcgctacgttgccatacgatgttctcgacatgacgactaagttcatgactgac
cctgtccgaatccttgtcaagcgtgatgaattaacgctcgagggtattaaacaatttttc
gttgctgtagaaagggaggactggaaatttgacacgttgtgcgacctttacgacactctc
acaattacccaggctgtcattttctgcaacacaaggagaaaagtggattggctcaccgaa
aagatgcgggcggcgaacttcacggtgtcatccatgcatggagaaatgccgcaaaaagag
cgagacgctatcatggcagaatttcgcgccggaacttcgcgcgtgctcatcaccacagac
gtgtgggctcgtggaatcgatgttcagcaagtctctctagtcatcaactatgatttacct
gcgaatcgtgaaaactatatccaccgtattggacggtctggacgctttggtcgcaagggt
gtcgcgataaacttcgtaactgtggatgatgttcgaatcttgcgtgatattgagcagtac
tacggcacgcagattgatgaaatgccagtcaacgccgcggaactcatttga
DBGET
integrated database retrieval system
