Fomitiporia mediterranea: FOMMEDRAFT_126875
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Entry
FOMMEDRAFT_126875 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03082
ATP-dependent chromatin remodeling
fme03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
FOMMEDRAFT_126875
03083 Polycomb repressive complex
FOMMEDRAFT_126875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_126875
Enzymes [BR:
fme01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
FOMMEDRAFT_126875
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
FOMMEDRAFT_126875
HDAC complexes
Sin3A-HDAC complex
FOMMEDRAFT_126875
BRAF-HDAC complex
FOMMEDRAFT_126875
REST complex
FOMMEDRAFT_126875
SHIP complex
FOMMEDRAFT_126875
MiDAC complex
FOMMEDRAFT_126875
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
FOMMEDRAFT_126875
Heterochromatin formation proteins
Other heterochromatin formation proteins
FOMMEDRAFT_126875
Chromatin remodeling factors
NuRD complex
FOMMEDRAFT_126875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
18671446
NCBI-ProteinID:
XP_007268999
JGI:
Fomme1_126875
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MSKRRVSYYYDNDVGLFSYGLGHPMKPHRIRMTHDLVSAYGMLDKMDILRPRRASPTNMT
AFHTDEYIHFLGRVTPETAEELTYHGTRFLVGEDNPAFEGVFEFCTISAGGSIDAAKRIA
AGATDIAINWAGGLHHAKKREASGFCYVNDIVLGILELLRTFPRVLYIDIDCHHGDGVEE
AFYTTDRVLTCSFHKFGEYFPGTGHVDDHGRDKGLGYAVNVPLRDGLTDEAFKGVFEPVI
QRILEWYQPSAVVLQCGADSLSGDKLGCFNLTMEGHASSVQYLRKSGLPLILLGGGGYTI
KNVSRAWAYETACALNIEDTIDRNLPWNAYFEWFGPRYRLEVAENNMDDLNPKDGYLESI
KEQVFKQMSALPFAPSVQMHEVPGESLGEHLGIPPFDIEENQESEELDNKLGQQFRRVFN
LRRNESSSSDDDGPSSPDSDSDDIQATERSRRHLYPHRYAKRMSLLGSMKTSITDEDAGQ
TARRFFHSAAVWDPTLKTVVLRDGVGAARGDLPSMDLTGPPTSQERMQLQMNGVDEDDMA
VDADERWGNGDVSISVES
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggcgtgtatcgtactattatgacaatgatgtcggccttttctcgtacggt
cttggacatccgatgaagccgcaccggatacgcatgacgcatgatctcgtctctgcatat
ggcatgctcgacaagatggacattttacgaccccgacgagcttctccaacaaatatgacc
gcgttccacacagatgaatatatccacttcttgggcagagtgacgccggagacggcagag
gagttgacatatcatgggacgcgcttcttggtaggagaggacaatcctgcatttgaaggc
gtcttcgagttttgcacgatatccgcaggcgggtcaatagatgctgcgaagcgtattgcc
gctggagcaacagacatcgcaatcaactgggctggtggactacatcacgccaaaaagcgc
gaagcttctgggttctgctacgtcaacgatatcgtacttggcatccttgagctcttgcga
acatttccgcgtgtactgtacatcgacattgactgccaccacggggacggtgttgaagaa
gcattctacacgacggatcgagtgcttacatgctcgttccacaagtttggggagtatttc
ccgggcacgggacatgttgatgaccatgggagggataagggccttggttatgctgttaac
gtcccgctaagagatggccttacggatgaagccttcaagggtgttttcgaacctgtgatt
caacgtattctcgagtggtaccaaccttctgccgttgtacttcaatgcggggcagattca
ctttcaggcgacaagctcgggtgcttcaacctcacgatggagggacacgccagcagcgtg
caatacctccgtaaatcgggacttcctcttattctactcggcggcggcggatatacgatc
aagaacgtttcgcgagcttgggcatatgagacagcgtgtgcgctcaacatagaggatacg
attgatcggaacttaccgtggaatgcatattttgagtggtttggcccaaggtatcggttg
gaggttgcagaaaacaatatggatgatttgaatccgaaggatggctacttagaaagtata
aaagaacaggtgttcaaacaaatgtcggcgttacccttcgcaccctccgtacagatgcac
gaagtcccaggggaaagtttaggcgagcatctcggaattcctcccttcgatatcgaagag
aaccaggaatcagaagaacttgacaataaactcggtcaacaattccgccgtgtattcaat
cttcgccggaacgagtcgtcatcaagtgacgacgacgggccatcatcacccgactccgac
tcagacgacatacaagcaaccgaaaggagtcgaagacacctatatccacatcgttatgca
aaacgcatgagtctacttgggtctatgaagacgtctatcacggacgaagacgcaggccag
acggctcgaaggttcttccacagtgcggctgtgtgggatcctactttgaagactgttgtg
ttgagagatggtgtaggtgctgcgcggggtgatttaccttcgatggatttgacaggtcct
ccgactagtcaggagcggatgcaacttcagatgaatggtgtggatgaagacgacatggct
gttgacgcagacgagaggtgggggaatggtgatgtttcgatcagtgtcgagtcgtga
DBGET
integrated database retrieval system