Fomitiporia mediterranea: FOMMEDRAFT_131906
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Entry
FOMMEDRAFT_131906 CDS
T03132
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
fme
Fomitiporia mediterranea
Pathway
fme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FOMMEDRAFT_131906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_131906
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
FOMMEDRAFT_131906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
18671742
NCBI-ProteinID:
XP_007263499
JGI:
Fomme1_131906
LinkDB
All DBs
Position
Unknown
AA seq
962 aa
AA seq
DB search
MALMYGKEKNEDHDFDQADISFISFFSKLPPKRADTIRLFDRRDFFSAHGEDATYIAMQV
FRTQSVLKYLGSGGKASGLPSVTLSNNVATAFLRDALTSLQLRIEIWVSEGGKKGAKFRL
EKEASPGNLQAVEDLLFVNTDMLSAPIVMAVKIGTSTLGAAGSSGIKTKAVGVAFADTSV
REIGISEFVDSDLFSNIESLVIQLSVKEAVIPMSSKTGNTDRDLELNKLKGVFERCGVVI
TERKPSDFAAKNIEQDLALLVKTNTGVDITASIPELSSSTSAAASATSALISYLSLLGDA
SNHNAYVLKTHDLSQFMKLDASALRALGLAGDSTTSAKNTTLHGLLNKCKTGQGTRLLGS
WLKQPLVNLHEIQKRQDLVQTFIHDSNTRRTLQDDYLRMMPDMHRISKRFQRSVATLEDV
VRVYQAAQKLVGLIEALETVETEDVGHNKLIEEIYLIKLKEHSQNLEKYSEMVEQTLDLD
ELSSHNFVIKPDYDDRLRELADKLIEIRDGLDAEHRKVGRDLGLELDKKLHLENSQNYGY
CFRITKSDAKVIHNEKDYIELGTNKSGVYFTTKKLRSLAMDFQEITDTYSRTQSSLVKEV
VNIAATYTPVLEALDDQIAHLDVIVSFAHVSANAPEEYVRPKLSVKGSGSVVLKNARHPL
LEVQDDISFIPNDVEMIKGESEFQIITGPNMGGKSTYIRQVGVIALMAQTGCFVPCSEAE
LPIFDSILCRVGAGDSQLKGVSTFMAEMLETATILKSASQDSLIIIDELGRGTSTYDGFG
LAWAISEYIASEIHAFCLFATHFHELTALDQQIPHVKNLHVVAHVSKTGESSQDRDITLL
YKVEPGICDQSFGIHVAELANFPESVVKLAKRKADELEDFGGEHEKQPTHPKEIVDEGSK
IVEQLLQEWTARCASAETGDGDVIMDEDEKAEKDLVALQNCVAKYQGQIDANPWIQQLIA
TL
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcatgtatgggaaggagaaaaatgaagatcatgatttcgaccaagccgatatc
agcttcatctcgttcttcagcaagctccctccaaagcgcgcagacacaatacgcttgttc
gacaggcgagacttcttttctgctcatggcgaagatgcaacatatattgctatgcaagtc
tttcgcactcaatcggtactcaaatatctcggttccggaggcaaagctagcggattgcct
agtgttacgctcagtaacaacgtagctactgcattcctacgtgatgcactcacgtcactg
caacttcgaattgagatctgggtgtcggaaggaggaaagaaaggtgcaaagtttagactt
gaaaaagaggcttcccctgggaaccttcaagctgtggaggaccttctgtttgtcaataca
gacatgctctcagcgcctatagtcatggcagtgaaaattggcacatcgacacttggtgca
gccgggtcatcgggcataaagacaaaagcagtcggggtagccttcgccgatacgtccgta
cgtgaaatcgggatctcagaatttgttgacagcgacctcttctcaaatatcgagtccctt
gtaatacaactgtccgtgaaagaagctgtaatcccgatgtcttcgaaaacaggaaatacg
gatcgtgatttagagttgaacaagctgaagggcgtctttgaacgttgtggagtcgttata
acggaacgcaagccgagtgacttcgctgcgaagaatatcgaacaagaccttgctcttcta
gtcaaaacgaacacgggcgtggacatcactgccagtatacccgagctttcctcttccacg
tctgctgccgcttctgctaccagtgctctgatttcatacctctctctactcggagacgca
tccaatcacaatgcatacgttctcaaaacgcatgatttatcccaatttatgaagctggat
gcgagtgctcttcgcgcccttggactggcaggagacagtacaacgtctgcaaagaatact
actcttcatggacttctgaataaatgcaaaacaggtcaagggactcgtctcttgggaagc
tggctgaagcaaccattggtgaacttacatgaaatccagaagcgacaggacctagtccaa
acattcattcacgactccaacactcggcggacgctacaggatgactacctaagaatgatg
cctgacatgcatcgaatcagcaagcgattccagaggtctgtagcaactttagaagacgtt
gtccgtgtctatcaggcagcacaaaagctcgtgggcttgatagaagcactagaaactgtg
gaaacagaggacgttgggcataacaaactcatcgaagagatctatcttatcaagttaaag
gagcacagccagaatctcgaaaagtactcggaaatggttgaacagacgcttgacctcgac
gaactttcttcgcacaactttgtcataaagccagattatgatgatcgcttacgagaattg
gccgacaagctcattgaaattagggatggacttgatgctgagcatcggaaggttggacgc
gatcttggtttggagcttgacaagaagctacaccttgagaacagccagaactatggttat
tgtttccgaattacaaagtctgacgcaaaggtgatacataatgagaaggactatattgaa
ctagggacgaataagagtggtgtttactttaccacgaagaagttgcggtccttggctatg
gatttccaagagataacggatacatattcacggactcaaagtagtttagtgaaagaagtt
gtcaatattgctgcaacgtacacgccggtcttagaagcccttgatgaccaaatcgctcac
cttgatgtcatcgtaagctttgctcacgtttctgcgaacgcaccagaggaatatgttaga
cctaaactttcagtgaagggatctggaagcgttgttctgaagaacgcaaggcatccactt
cttgaggtacaagacgacatcagtttcatacccaacgatgttgaaatgatcaaaggggag
agcgagtttcaaatcataactggcccaaacatgggcgggaaaagcacatatattcgtcaa
gtcggagttattgccttaatggctcagacgggttgcttcgtaccatgctctgaagccgaa
cttcctattttcgactcaattttgtgccgagtcggagcaggagacagtcaacttaagggt
gtctcaacgttcatggctgaaatgctggagacggctacaatcttgaagtcagcatcgcag
gattcacttatcatcattgatgaattaggccgaggtacatcaacatacgacgggttcggc
ctcgcatgggcgatttctgaatacatcgcatcagaaatccacgcattctgtctcttcgcc
acgcattttcacgagttgacagcactcgaccaacaaatcccacacgtcaagaatctacat
gtcgttgcacacgtctcgaagaccggggaatcatcacaggatcgtgacatcaccctactc
tataaagtcgaaccaggcatttgtgatcagagcttcggtatccacgtcgccgagctagct
aatttcccagagagtgtcgtcaaactggccaagcgaaaagccgacgaactagaagacttt
ggcggcgaacacgaaaagcaacccacacatccaaaagaaatagtagacgaaggaagcaag
atagtcgaacagctcctccaagaatggacagcacgctgtgcgtctgctgagacaggcgac
ggagacgtgattatggatgaagacgagaaagccgagaaggacttggtagcacttcagaat
tgtgttgcaaagtaccaaggacagatagatgccaatccctggattcaacaacttatcgca
actctctga
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