Fomitiporia mediterranea: FOMMEDRAFT_132390
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Entry
FOMMEDRAFT_132390 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K10755
replication factor C subunit 2/4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03030
DNA replication
fme03410
Base excision repair
fme03420
Nucleotide excision repair
fme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOMMEDRAFT_132390
03410 Base excision repair
FOMMEDRAFT_132390
03420 Nucleotide excision repair
FOMMEDRAFT_132390
03430 Mismatch repair
FOMMEDRAFT_132390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_132390
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_132390
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_132390
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
FOMMEDRAFT_132390
DNA Replication Termination Factors
ELG1-RFC complex
FOMMEDRAFT_132390
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
FOMMEDRAFT_132390
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
FOMMEDRAFT_132390
Check point factors
HRAD17(Rad24)-RFC complex
FOMMEDRAFT_132390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
Rep_fac_C
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_assoc_2
AAA_11
AAA_2
AAA_16
RuvB_N
AAA_24
AAA_7
AAA_14
AAA_5
SLFN-g3_helicase
AAA_28
Mg_chelatase
AAA_19
AAA_30
bpMoxR
ResIII
DUF815
Motif
Other DBs
NCBI-GeneID:
18671767
NCBI-ProteinID:
XP_007264113
JGI:
Fomme1_132390
LinkDB
All DBs
Position
Unknown
AA seq
370 aa
AA seq
DB search
MFLKPQTTKSAQKQAGADPALQPWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLF
YGPPGTGKTSTILALSRQLFGPDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAV
ASDGKTYPCPPYKIIILDEADSMTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLAS
RCSKFRFRPLDDSATKLRLQHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLS
SSTDPPTEITSQDIQEIAGVVPDRVVNSFGRVLGVDISDGDEMDVDDAKKRRKGFEAVKF
KVKGLIREGYSAFQLLSQLHDLIILHPTLTARQKARCAMVFAEADKALCDGADEELQVLE
VALQVHQALS
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcaaacctcagaccacgaaatccgcacaaaaacaggcaggtgctgatcctgca
ctgcagccctgggtcgagaaatatcgtccaaagacaatcgacgatgtctcctctcaagaa
catatcgtagctgtgcttcaaaagacgctgacgtcgaccaatctccctcatatgctattc
tatggacctcctgggacagggaagacctcgaccatccttgcactatctcgtcaactcttc
ggtccagacaacttcaaaaaccgcgtactcgagctaaacgcatccgacgaacgtggcata
acgatcgtacgagagaaaatcaagaactttgctcgtcaaactcctcgtgcgcaagccgtc
gcatcagacggcaaaacctatccttgtccaccatacaaaatcatcatactcgacgaggca
gactcgatgacacacgatgcccaatccgcattgcgtcgtatcatggagacctacgcacga
atcacgcgcttctgtttagtgtgcaactacgtgactcgcattatcgaacctctcgcctcg
cgttgttccaagttccgcttcagaccgcttgatgactctgctaccaagctacgcctccag
cacattgctgatgctgagagagttccggttatcccagaggttgtcagcacgcttataaac
gtttcaggcggtgacctccgacgttcgataacatatttacaatcggcctctcgactttca
tcatcaacagatcctccaacggagatcacatctcaagatattcaagaaatcgcaggagta
gtaccagaccgagtagtgaactcctttggccgtgtactcggtgtagatatcagcgatggc
gatgaaatggatgtagatgacgctaagaaacgacggaaaggctttgaagctgtcaaattc
aaagtaaagggtcttatacgggaaggatattcagcatttcaacttctttcacaactgcac
gacctaatcattttacacccgacgttgactgctagacaaaaggcgcgatgtgcgatggtc
tttgctgaggcagacaaagcattatgcgacggtgcggatgaggaactccaagtacttgaa
gttgccttacaagtgcaccaggcactgagttaa
DBGET
integrated database retrieval system
