KEGG   Fomitiporia mediterranea: FOMMEDRAFT_133775
Entry
FOMMEDRAFT_133775 CDS       T03132                                 
Name
(RefSeq) Cullin-domain-containing protein
  KO
K10609  cullin 4
Organism
fme  Fomitiporia mediterranea
Pathway
fme03420  Nucleotide excision repair
fme04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    FOMMEDRAFT_133775
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_133775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fme04121]
    FOMMEDRAFT_133775
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_133775
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:fme04147]
    FOMMEDRAFT_133775
Ubiquitin system [BR:fme04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     FOMMEDRAFT_133775
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      FOMMEDRAFT_133775
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      FOMMEDRAFT_133775
Exosome [BR:fme04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   FOMMEDRAFT_133775
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 18671869
NCBI-ProteinID: XP_007266132
JGI: Fomme1_133775
LinkDB
Position
Unknown
AA seq 713 aa
MQAVLTRSQPYVSKAPKQYPFVHEDIFNATRTVVIIAGKGQWVYDKLKFELREAVNAVNK
HLNPTQDVGVMEWLEELVSATVWFDQCVRLLEALLTYLDRVFVPQKLDTLHIRQLAVQLY
KTHVFFQDRTSSRIKEAVQDWATSERRDRLVHPRRQTVVTLVGLLSDYALFGDLLLEPYN
MATRSFYLRESEQLAESLKDDQNAFLLHCAERLQEEQNRSSDVLASFEGDWLKIQKTTEI
SLLESRLQWLSAGIESSVNGRNMGGLHRMYNLFERVEGLGVLCDAFKEHVQKTVASIVSD
KERDEELVDRLLDFKRFVDSALDEAFAGNKLFKNAASDAYATGFRVRKITPAEMIAKYLD
REMRRGQREASDEEFSRKLDAVLALYRFTRDKDVFRTFYHKALAKRLLLQRSASDDFEKS
VLKTLKEHYDPEFSMGDHMFRDLALSRDLIREFQERESRNASESGAEPPSHRLNVMVLEA
AFWPFSAKRSGEAVLPNAMQTELARFETFYANKHKGRKLHFDHSLGTAALRARFKAGEKE
LTVSMYQTLVLLLFNESDEVGFLDIKEQTRIDDAELRRTLQSLACGKKKVLKKKPVGRDV
NDSDVFAFNADFTDERARVHINSIQAKETPEESKRTQGAIAMERKSLLDAAIVRIMKAKK
TMSHQALINETVDVMKKHFQPDVSMIKVRFEQLIEQEYMKRDEDEPNKYVYVA
NT seq 2142 nt   +upstreamnt  +downstreamnt
atgcaggccgtcttaactagatcccagccatacgtctccaaggccccaaagcagtacccg
ttcgtccacgaggatatattcaacgctactcgcactgtcgtcattattgctggaaagggc
caatgggtatatgataagctgaagtttgaactcagggaagctgtcaatgccgtaaataaa
catttgaacccaacccaagacgtgggggtcatggagtggctggaggaacttgtctccgct
actgtctggttcgatcaatgcgtgcgcttattagaggcactcctaacatatcttgaccgc
gtctttgtccctcaaaagctagatacactccatattaggcaacttgcagtgcaactctac
aaaacgcatgtattctttcaagacaggacttcgtctcgcataaaggaagctgtacaagac
tgggcaacgtctgaacgccgagacaggttggtacatcctcggcgtcagacagtcgtcaca
cttgtaggccttctctcggactacgcgctgttcggagatctcctcctagaaccatataat
atggccacgcgttccttctacctgagggagtccgagcaactggcagaatcgttgaaggac
gatcaaaatgccttccttctacattgtgcggaacgtctgcaagaagagcagaatcgtagt
tccgatgtacttgcttcatttgaaggagactggcttaagattcagaagactacagagata
tcactattggagagtaggttgcaatggctaagtgctgggatcgaaagctcggtgaatgga
agaaatatgggaggtttgcatcgcatgtacaatcttttcgagagggtcgaagggctggga
gttctatgcgatgcattcaaagagcatgtgcagaagaccgtggcgagtatcgtgagtgac
aaagaacgtgacgaggagttggtagaccggctgctggacttcaagcgcttcgttgattct
gcactggatgaggcgtttgctggaaacaagctgttcaagaacgcagcatcggatgcatat
gctactggattccgtgtgcggaaaattacgcctgcagagatgattgcgaagtatctagat
cgcgaaatgcgtcgcggacagagggaggcgagcgacgaagagttctcgcgaaaactcgat
gctgtgctcgcgttgtaccgtttcacccgtgacaaagacgtgttccgaacattctatcat
aaagcactcgcgaagcgtcttctgttacaacgcagtgcatcagacgactttgagaagtca
gtgttgaaaacgctcaaagaacattacgatccggagttcagtatgggtgaccatatgttc
cgtgaccttgcgctctcgcgagacctcatacgagagtttcaagagcgcgaatctcggaat
gcatcagaatctggcgccgaaccgccttcacaccgactaaacgtaatggtgctggaggcc
gcgttctggccattctcggcgaaacgctcaggcgaggctgtcctgccaaacgcgatgcaa
acagagctagcgcgctttgagaccttctatgccaacaaacacaagggccgcaagctccac
tttgatcactcgctgggcactgcagcgcttcgtgcgcggttcaaggcaggtgagaaggag
cttactgtcagcatgtatcagacgctcgtgttgctgttgttcaatgaatcggatgaagtt
ggatttttggacatcaaggagcagacgcgaattgatgacgcggaactccgacgaaccctt
caatcactggcctgcgggaagaagaaagttctcaagaagaaaccggtaggccgagacgtg
aatgactcggatgtctttgccttcaatgcggacttcacggatgagcgagctcgtgtccac
attaactccatacaagcgaaagaaacgcccgaggagtcgaaacgcactcaaggcgcaata
gcgatggaacgcaagagcttacttgacgcagccattgtgcgaattatgaaggcgaagaaa
acaatgtcgcaccaggcactcatcaacgagactgtagatgtgatgaagaagcatttccag
cccgacgttagcatgatcaaagttcgctttgaacagcttattgagcaggaatatatgaag
cgcgatgaagacgaaccaaacaagtacgtatacgttgcatga

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