Fomitiporia mediterranea: FOMMEDRAFT_134134
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Entry
FOMMEDRAFT_134134 CDS
T03132
Name
(RefSeq) transcription factor
KO
K14327
regulator of nonsense transcripts 2
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
fme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_134134
03015 mRNA surveillance pathway
FOMMEDRAFT_134134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_134134
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
FOMMEDRAFT_134134
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_134134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
18671899
NCBI-ProteinID:
XP_007266686
JGI:
Fomme1_134134
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MASEVASTVQTVGTKDREDEEYIRRNRRKALKELNLGNHGEVSSKNLDSSLKRHTALIKR
MRQSIGTENNEQIMKDITSLSLEKYIDELASAAHEGIARCKTERDVWSAVEIISALHRRF
PKGFTPAINALLSTALLPPQRTVVSSIGTQNPASTPAGNVAGTASNATITPEQKEKEDAA
RVTRQRPVLRVCAELALVGIIRDAPGKSGGEWMMKTLKDLLSNDPTLSSLPLLTTFLKSY
ARPFLGITPSTGSKAQIPEGTTTDLVAAVARQNADGFPQLGTDGEEDELVEKETRARFKR
MCEGYFESVSKKLVIEHKRLQEQDRKNHEAYIRSGEIFEDRQQSYEKMTKSYEKLLSSCQ
TLSELLNLPMPTLPAATQKNDTIIVSAAGQQTTQEEIYVIGGKWEDEEERRFYEDIQDLR
DFVPKSVLGLDETDGQQPDEKSGLNKTKDEELEKEKKRQEEKEARELEKELKRLELGHEA
KDETRNDNAPDEVEMEDDSAVTPVPSPPKSPSPPQSPSLAPQGPSQLLTALLARLPDCTN
RTLIDSAAVEFAFLNSKAARKRLVKFMTQVPKNRTDLLPHYSRLVATLHKYMPDVSADLI
ASLEEEFRYLQRKKNVVKEFAETRQKNIAFISCLTKFGVVPTHVILHIFKVCLDDFSGVN
IDNLAMLLEGCGRYLLRSDETKDRFVTMIELMRRKQSMQHLDPRQTLMLENAYYQCNPPE
RAPIKEKERTPMELFIRHLVYDVLTKKTIDKVLKLIRKLNWDDAQVVRALHNAFTRPWKI
KYSNISLLAMLVYDLQRYHPEFSVAVVDQVLENVRRGMETNAYRENQQRVATIKYLGELY
TYRVISSSIIFDTLWSLVTFGHPEGRPLPGQACPLDMPDDFFRIRLVCVLLDTCGMCFDK
GSQKKKLDNFMIFFQLYVFTKENLPMEVEFMLEDTLEALRPKMNKLKDFEEAAHAVDELF
TQILHTNVNDAEGEDSGEESDEDREGDDRVGSEEDEDDDQTVSESMTNERPPSPDTLVLL
NAPENLGPTDEDENEFAKELAKMVTDSAAEARKVDKRTAQALWDSATMPSGFRKKKYDNS
DEDGDVSDDGESENQETMKFVVLTKKGNKQQAKKIAIPANTALAAQTRNAQLQDKVEQQH
LKKLVLDYEQREEVEEFKGRSLESRTRNGAIKIRYVG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagaagtggcgagtaccgtacaaacggtgggtaccaaggacagggaagacgag
gaatacattcgacgcaatcggcggaaagcattgaaagaactcaatctaggaaatcatgga
gaagtatcatccaagaacttggattcatcgttgaagcgtcacactgcactcatcaagcgg
atgcgccaatcaataggcactgaaaataatgaacagatcatgaaagatatcacgtcattg
tcactagagaagtacattgatgagctagctagcgcggcgcatgagggtattgcgcgctgc
aagactgaaagggatgtgtggagcgccgtcgagattatctctgctctccaccgtcgtttc
ccaaagggtttcactcctgcaattaacgcgcttctcagcacagctcttcttcctcctcag
cgcacagtcgtatcgtctattggaacgcaaaatcctgcatccacgcctgcgggtaatgtt
gcaggtaccgcgagtaatgcaacaatcacaccagagcaaaaggagaaagaagatgccgct
cgagtgaccagacagagacctgtgttgcgtgtatgcgctgaactggctctggtcggaatc
attagagatgcacccgggaagagcggaggtgaatggatgatgaagacactcaaggatcta
ctttccaatgatcctacattgtcttcgttgccattattaactacatttctaaaatcttat
gcgagaccctttcttggaatcaccccttcaacagggtcaaaggcacagattcctgaaggc
acgacgacggaccttgttgctgctgtcgcaaggcaaaatgcggatggctttccccaacta
ggcacggatggcgaagaagacgagttggttgagaaagaaacaagggcacgtttcaagagg
atgtgtgaaggttactttgaaagcgtttcgaaaaagcttgttatcgagcataaacgtttg
caagagcaggatcgcaagaaccatgaagcatatatcagatctggagaaattttcgaggat
cgtcaacaatcgtacgagaagatgactaagtcatacgagaaactactctcaagctgtcaa
acactctctgagcttctcaatcttcctatgccaactctgccagccgcaacacaaaagaat
gatacaattattgtctctgcagctggccagcaaacaacgcaagaagaaatttatgtgatt
ggtgggaaatgggaagatgaagaagaacgtcgattttacgaggatatccaggaccttcgt
gactttgtgccgaagagcgtgctggggctcgatgagacagatggccagcaaccagacgag
aaatccggactaaacaagacaaaggacgaggaattagaaaaggagaagaaaaggcaagag
gagaaggaagccagggagctagaaaaggagctgaagagattagaactcggacatgaggca
aaagatgagaccagaaatgataatgcacctgacgaggttgaaatggaggacgacagtgct
gttactccagttccctcaccaccaaagtcgccttcaccgccacaatctccatcactcgca
cctcaagggccttcgcaactgctcactgcactattggcacgccttccggattgcactaac
cgtacattgatcgattctgccgcggtcgaattcgcttttctgaattcgaaggcggcacgg
aagcgtcttgttaagtttatgacacaagtcccaaagaacaggacagacttgttgcctcat
tactctagactagtcgcaactttgcataagtacatgcctgatgtcagtgcagacctgatc
gcatctttggaggaagagtttcgctatctccagcggaagaaaaatgtagtgaaggaattc
gctgagactcgtcagaagaacatcgcgttcatctcatgcttaacgaaatttggagtcgtt
ccgacgcacgttatactgcatatatttaaagtctgcctggatgatttctctggagtaaat
atcgataatcttgcgatgttgcttgagggttgcggtcgctatcttttgcgaagcgatgaa
acaaaagatcgattcgtgactatgatcgagcttatgcggcgaaagcagagcatgcagcac
ttagatccaagacagactctgatgctggaaaacgcctattatcagtgtaaccctccagag
cgagcgcctatcaaggagaaggaacgtacacccatggagctgttcatcagacatcttgtc
tacgacgtccttacaaagaaaacgattgacaaggtcctgaaactcattcgcaagctcaat
tgggatgacgctcaagtggtccgtgcgctgcacaatgcattcaccagaccatggaaaatc
aaatacagtaacatcagcttgctcgccatgttggtttatgacttgcagcgttaccatcct
gaattctccgttgccgtcgtcgatcaggtccttgaaaacgtgaggagaggaatggaaact
aacgcttacagagagaatcagcaacgggtcgccacgattaagtaccttggggagctttac
acctatcgtgtcatttcttcaagtattatttttgatactctctggagtctggtgactttt
gggcatcccgaaggacgtcctttacccggtcaagcatgtcctctcgatatgccggacgat
ttcttcagaattagactcgtctgcgtgctgttggatacatgtggcatgtgctttgacaag
ggatctcagaagaagaaattagataatttcatgatattcttccagttgtatgtgtttacg
aaagagaaccttcccatggaggtcgaatttatgttggaagacacattggaggcattgaga
ccgaaaatgaataaactgaaggacttcgaggaagcggcccatgctgtggatgaactcttc
acacaaattcttcacactaacgttaatgatgccgagggtgaggacagcggagaagaaagc
gatgaggaccgcgaaggcgacgatcgagtgggttctgaggaagacgaagatgacgaccaa
actgtgtccgagtccatgaccaatgagcgacctccttctccggacactttagttctcctg
aacgcaccggaaaatctgggccctacagatgaagatgaaaatgaatttgcgaaggaactt
gccaagatggtcacggattcggccgcagaagcgagaaaggtcgataagcgaacagcccag
gcgctgtgggactcggcaacgatgccgtcaggctttcggaaaaagaaatatgataatagt
gatgaggatggagacgtatcagacgatggtgaatcggagaaccaggagaccatgaaattc
gttgttcttacgaagaagggaaacaagcaacaggctaagaagattgcgattccagctaat
accgcgttagctgcgcagacccgaaatgcacagctacaggacaaagtcgagcaacagcac
ttgaagaaactcgttctcgattatgaacagcgcgaggaagtggaagaattcaaaggcagg
tctcttgagtcccggacccgaaacggtgcaatcaagatacgatacgttggataa
DBGET
integrated database retrieval system
