Fomitiporia mediterranea: FOMMEDRAFT_134329
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Entry
FOMMEDRAFT_134329 CDS
T03132
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_134329
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_134329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_134329
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_134329
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_134329
mRNA degradation factors
5'-3' decay
Lsm complex
FOMMEDRAFT_134329
Spliceosome [BR:
fme03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FOMMEDRAFT_134329
Complex C
U2 snRNP components
FOMMEDRAFT_134329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
18671915
NCBI-ProteinID:
XP_007266955
JGI:
Fomme1_134329
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MLIFSLFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVLDEANHPHMMAVKNC
FIRGSVVRYVQLPAQHVDTQLLEDATRREAANQVKR
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcttctcgctattcaaaacactaactgaccaaacggtcactgttgagctaaag
aatgatctttcgataactggtgttctcaaatcggtcgaccagttcctcaatattcgtcta
gacaacatcaaagtcctggacgaagcgaaccacccacatatgatggctgtgaagaactgc
tttattcggggttcggttgtgcgatacgtacagctacctgcgcagcatgttgatacgcag
cttttggaggatgcgacaagacgcgaggctgcgaatcaggtcaaacgatag
DBGET
integrated database retrieval system
