Fomitiporia mediterranea: FOMMEDRAFT_134669
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Entry
FOMMEDRAFT_134669 CDS
T03132
Name
(RefSeq) SNF5-domain-containing protein
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03082
ATP-dependent chromatin remodeling
fme03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
FOMMEDRAFT_134669
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
FOMMEDRAFT_134669
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
fme01009
]
FOMMEDRAFT_134669
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_134669
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_134669
Protein phosphatases and associated proteins [BR:
fme01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
FOMMEDRAFT_134669
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
FOMMEDRAFT_134669
SWI/SNF complex
FOMMEDRAFT_134669
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
FOMMEDRAFT_134669
PBAF complex
FOMMEDRAFT_134669
SWI/SNF complex
FOMMEDRAFT_134669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
Med19
Motif
Other DBs
NCBI-GeneID:
18671933
NCBI-ProteinID:
XP_007267466
JGI:
Fomme1_134669
LinkDB
All DBs
Position
Unknown
AA seq
1814 aa
AA seq
DB search
MNAYQYPPHQQQQSPQHLNSQQQQQQHHQSQSSPTAAVNPNQAQSHGSGINPAMLQGAQH
ASAQGGAGGRMPGAAAGMSQQAQMLARQQQMMAGMGGGGGGGMGGMNGMASLSGMGNMSG
MGAASGMGGMSNMGNMGMPNGAMNMNMANRINSMNMPGMGGMSGMGMNNMGSMDLFKPNN
VPGGAGGGSGGMNMGLDNGMTINPAMLGSANPNANGGAGMSPQDLQKVMAARQAALGMSG
MNNMGGMNNMAGMNGMGSMAGMGGMAGMGSMGSLGGMNEMNGMNMGMNMMGASAQQQAMM
QQYLAQQQARQQQQAQSQSHSPQSATHTPASASGGNPYPPFPPQSQSQQMQGQNVSAGSM
PPPPPRPNTAMSASSQHGIGMGIPRPPSTMHNQQAMHGQQPQQMGHGSISRPGTASGFRP
SSSAGEAPRTPHTPNLANQQGSGGMQSMGQGQGQHVREPSHPPSRPQTAASNHGSMQSGM
NGKYPMGVSGMGGAGGMNNMGNMGNMSSMPGMNLMGGAGGGMMPPPTIPRQGSLGPSSQP
QSSMQPPNTPHGMHHNQQHGMMPGHGHGSPLSASAPGSAGLQRTPSIGEGLGGMGAGMGG
AGMDDPMGNMSGMNTGLGMGSGMSNAAMTPGMGIGVGGIGGIGVGGIGGMSQMQHMQEMQ
QRKAIALNEYHKQQAARQQQLAHQQQQQQHQGPTPNSAAVVPSPGAAIPSAGMSAGPGAD
AQGINMAQGHVPANQISIPGAGMNVGMGAMGTPTRPPTTGRTSMPPPPGSAAAMSMGGVA
PLSGASSGVSAGTVPPPATSASGASVSPSVNGAAAPTSAANGSASTSSAANAQNALAASL
PPLPAGVLNQATTRMTVIPISESAKQIPPLSQEEIEKVAGWLKTDREYEARFRAMVTRSK
AELAVLQRPRWWERDTNPAAIAAAQRRPKEKFELSYPHGAPQSREAAAAAARRRGRRREG
LKIPGRLKDADAERGEQLVPIRLEFDVEHHKYRDTFVWNLNDPIVTPEAFAQSLIDDYGL
SSGYHSQITKQIQEQLSDFKAHTATLVDVSNDLDLSSNGMDVKAPPIHGLIKDDSDEAKF
WASWRGKLRTRTGAVKTNALLKELAAEMASMERSRKRKRSAVEKEKGREKEKGKNKDATA
TAATPATPVTAASASAEELKPIPGADQSMDVEMRDAEEDIMHEEMRIEIKIDVTVGEMKL
DDTFEWDIENADPTPEQFAEVYCTDLGLSSEFKTAVAHSIREQVSTYQKSLFLVGHPSDG
SAVQDDDLRMSFIPTVTFVTRPLDQTTLTQPVINYLSDGELDRLDKEREKEANKRRKRNT
RGRRGITLPDREPIRTHRTPAIGFPEIDPSTLALAAAAAAPTSRRAAAAAASVTIANMVA
SENGTTVLPQVTPQPSVPTLPTSKVPKPRGSFKAPSYPSSVLKSRANITSPTPSTMVDSA
VHEPPLEGDAPLPVSAPATPSAPPSKATNVPMTARRQRELEKEAKEREFADGQRANMING
VWHCSNCGCPDSVAVGRRKGPLGDKSQCGACGKFWHRHRRPRPVEYHTDPEYHLNLKMES
ERAKASAKKRGGAAALRALNQQQKQDDQAATPASVPDEPASPAASKNEVWVEINKSTKKA
SVVADGLDLDRPLSPASDISSSASEKPLAQGLLQANGTASVSRPASAAATPLKGSSELPV
HNEASSSVTKPAHAPPLKESSSSEPPSATPASATPGPDSAVSQGPPMPRPVRPQWQEGAL
AEMQARYPDDRFEIILRKQNNGNQPEWRVKCLDCPGKLYTPGPGESLSNFEVHLKNRQHR
AKVHGRLHGGAAQT
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcctaccagtaccctcctcatcagcagcagcaatctcctcaacatcttaattct
cagcagcagcagcaacaacatcaccaatctcaatcttcaccgactgcagcggtgaacccg
aatcaggctcagtcgcacggtagtggtattaatcctgccatgcttcagggcgcgcagcat
gcgtccgcacagggtggtgcgggcggccgtatgcctggcgcggctgctggtatgagccag
caggcgcagatgcttgctcgtcaacaacagatgatggcgggcatgggtggtggtggtggt
ggtggaatgggtggtatgaacggtatggctagcttaagtggcatgggcaacatgtctggt
atgggagccgccagtggtatggggggtatgagtaacatggggaacatgggcatgccgaat
ggcgcgatgaacatgaatatggccaaccgtataaatagtatgaacatgcctggcatggga
ggcatgagcggtatgggcatgaataatatgggatcgatggatctcttcaagccaaataac
gttcctggaggcgcaggtggaggatctggaggaatgaacatgggcctcgacaacggcatg
acgattaaccctgccatgcttggctcggcgaatccgaatgcaaacggtggtgcagggatg
tcacctcaggatttgcagaaggtgatggcggcacgacaggccgcgctcggtatgagcgga
atgaacaacatgggaggtatgaataatatggctggcatgaacggtatgggaagtatggcc
ggcatgggcggaatggcaggcatgggtagcatgggaagtctcggtggcatgaacgagatg
aacggcatgaatatgggtatgaacatgatgggagcgagtgcacaacaacaagccatgatg
cagcagtacttagctcaacaacaagctcgccaacagcaacaagcccaatcgcaaagccat
tccccgcagtccgcaactcacactcctgcttctgcttctggaggaaacccatacccgcct
ttccctccacaaagtcagtctcaacaaatgcaaggtcaaaacgttagcgcaggttcaatg
ccaccgccgcctccgcgtccgaatacagcgatgtcggcctcatcacaacatgggatcggg
atgggtattccacgtccgccgtcgaccatgcacaaccaacaggcgatgcatggtcaacag
ccgcagcaaatgggtcatgggtcaatatcaagacctggaactgcttcgggattccgacct
tcgagctcggcaggagaagccccgcgtacacctcatacaccgaaccttgcaaatcagcaa
ggctcgggtggtatgcagagtatgggccagggccaaggccagcacgtacgtgaaccctca
catccaccttcgcgtccccagacggctgcgtcaaatcatggatctatgcagagtggcatg
aacggtaaatatccgatgggagtgagcgggatgggtggtgctggcggtatgaacaacatg
ggtaacatgggtaacatgagcagcatgccaggaatgaacctcatgggcggcgctggtgga
ggaatgatgccgccaccgactattccgcgtcaaggttctcttggtccatcctcgcaacct
cagtcgtctatgcagcctccgaacacgccacatggaatgcatcacaatcagcaacacggc
atgatgcctggccatgggcatggttcacctttatctgcttccgcaccaggatctgcaggg
ctccagcggacaccgagtatcggcgagggactcggcggtatgggtgctggtatgggtggc
gcgggtatggacgacccaatggggaacatgtctggtatgaatacgggacttggcatgggc
tcgggtatgtccaatgcagctatgacgcccggaatggggataggtgtgggtggtatagga
ggaattggcgtaggaggcataggcgggatgagccagatgcaacatatgcaggagatgcag
caacgtaaggcaattgcactcaacgagtaccataaacaacaagctgcacgacaacagcaa
ctggcacatcagcagcagcaacaacaacatcagggtccgactcccaacagcgctgccgtt
gtaccctctcctggtgcggcgattccttcagcaggaatgagtgcgggaccgggagctgat
gcacagggcatcaacatggcacaaggacacgtccctgcaaatcagatctctatacctggt
gcagggatgaatgtgggcatgggtgctatgggtacacctacgcgccctcctacaactgga
agaacaagcatgccaccaccacctggctcagcagcggcgatgtccatgggtggcgtcgca
ccgttgtctggtgccagttccggcgtgagcgctggtactgtaccgccgcctgcaacatct
gcctctggtgcctccgtttccccttctgtcaacggtgctgctgcaccgacctctgctgcc
aacggctctgcatccacgtcctccgccgcgaatgcacagaacgctcttgccgcatcactt
cctccactccctgctggtgtactcaatcaagcaacgacacgcatgacagttatccccatc
tccgagtccgctaagcaaatacccccgttatcgcaagaggagatcgaaaaggttgctggg
tggttgaagacagatcgcgagtacgaggcacggtttcgagcgatggtcactcgttcgaag
gcggagcttgctgtactgcaacgtccacggtggtgggagcgagatacgaatcctgccgcg
atcgccgcagcgcagcgaaggccgaaagagaagtttgagctgagctaccctcatggtgct
ccacagtcgcgtgaggctgctgcagctgccgcgaggcggaggggccggagaagagagggt
ttgaagatccctggaaggttgaaagatgcggatgcggagcgaggggaacagctcgtaccg
attcgattggagttcgatgtcgagcatcataagtaccgggatacctttgtgtggaatttg
aatgatccgatcgtcactcctgaggcgtttgcgcaatctttgatcgacgattatggattg
tcgtcggggtatcattcacagattacgaagcagattcaagagcagttgagcgacttcaag
gcgcatactgctactcttgtggatgtcagcaacgatttggacctttcgtccaatgggatg
gatgtgaaagcaccgcctatacatgggttaatcaaggacgacagcgatgaagcgaagttc
tgggcttcgtggagagggaaactgaggacgcggactggggctgtgaagacgaacgcgctt
ttgaaggagcttgcggcggaaatggcgagtatggaacgctcgagaaagaggaagcggagt
gcggtggagaaggagaaaggcagagaaaaggagaaaggcaaaaacaaagacgctaccgct
accgctgcgacaccagcaacaccggtaacagcggcatcagcttctgcagaggagttgaag
cccattccaggggcagatcagagtatggatgttgaaatgcgtgatgcggaagaggatatt
atgcatgaggagatgaggattgagattaagattgatgtcactgttggcgagatgaagctg
gatgatacctttgagtgggatatcgagaatgcggatcctacgccagaacaattcgcggag
gtatattgcaccgatctcgggctttctagtgaattcaagactgctgttgcacactcgatt
cgcgagcaagttagcacgtatcagaaatcactcttcctcgtcggacatccctcagatggc
tcagccgtacaagacgatgacctgcgcatgtcattcatacctacagttacctttgtgacg
cgcccgcttgatcagacaacgttgacccaacctgttatcaactatcttagcgacggagag
ctcgaccggctcgacaaggaacgtgaaaaggaggcgaacaagcgtaggaagcgtaatact
cgcggacgtcgtggaattacactcccggatcgtgaaccgattaggactcatcgtactcct
gcaatcggtttcccggagattgatccgtcgactctcgcacttgctgctgctgcggcagca
ccgacttcacgtagagccgcggccgccgctgcttccgtcacgattgcgaacatggtcgca
tcggagaatggtacgactgtgcttcctcaggtgactccacagccttctgtgccgacgctt
cctacgtccaaggtgccgaaaccgcgtggttcgttcaaagcaccttcatatccgagttcg
gttctcaagtctcgcgcgaatattacgtcgccgactccgtcgaccatggtggacagcgct
gtgcacgagccgccgttagagggcgatgcaccattaccagtgtcggctcctgctacccct
tctgcgcctccgtctaaggcgacaaacgttccgatgacagcccgtcggcaacgggagctg
gagaaggaggccaaggagcgcgagtttgcggatggacagcgcgcgaatatgatcaatgga
gtgtggcattgctcgaattgcggttgtccggatagtgtagctgttggacgaaggaaggga
ccgcttggagataagtcgcagtgtggtgcatgtggaaaattctggcataggcatcgaaga
ccgcgacccgttgagtatcacacggatccagagtatcatcttaacctgaagatggaaagc
gaacgggcgaaagctagtgctaagaagcgtggtggtgcagcagccctgcgtgcattgaac
cagcagcaaaagcaggatgaccaagcagcaacaccagcttctgtaccagatgagcctgcg
tcaccagccgcgtccaagaacgaggtgtgggtcgagattaacaagtcaacgaaaaaggcg
tctgttgtggcagatggactggatcttgaccgtccgctttcaccggcgtcggatattagt
tcgagtgcgtcggagaaaccgcttgcgcagggtttgcttcaggcaaacgggacggcgagt
gtgagtaggcctgcttcggcggctgctacgccgttgaaagggagctctgagcttcctgtg
cataatgaagcgtcatcgtctgtcacgaaaccggcacatgctcctccattgaaggagtcg
agttcctctgagccgccgtctgctacaccggcgagtgcaactcctggtccagattcggct
gtatcacaaggtccgcctatgcccagacctgttcgaccgcaatggcaagagggtgcacta
gctgagatgcaagctcggtatccggacgacaggtttgaaatcatcctgcgcaagcaaaat
aatgggaaccaaccggagtggcgtgtcaagtgtctcgattgtcctggaaaattgtatact
cctggtcctggcgagtcactgtcgaactttgaagtccacttgaaaaatcgacaacatcgt
gcgaaggtgcacgggcgtttgcatggtggagctgcccagacgtag
DBGET
integrated database retrieval system
