Fomitiporia mediterranea: FOMMEDRAFT_134856
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Entry
FOMMEDRAFT_134856 CDS
T03132
Name
(RefSeq) ribosomal protein S5 domain 2-like protein
KO
K12587
exosome complex component MTR3
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_134856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_134856
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FOMMEDRAFT_134856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF842
FA_synthesis
Motif
Other DBs
NCBI-GeneID:
18671944
NCBI-ProteinID:
XP_007267703
JGI:
Fomme1_134856
LinkDB
All DBs
Position
Unknown
AA seq
262 aa
AA seq
DB search
MASSAFDRRRINGPEESFTPIYASDEEEGEQLGVGPSKGRRGRSASDIRPIFLKTGLISQ
ANGSAYIETEKTKIACAVYGPRQSKTSTYHEKGKLHVEVKFAPFSCAKRRAPMRDAEDRS
VSILIQQSLTPAIRLELIPKSSIDIFLFVIENDGIEGCVSAGAIAASTALAHARIDMLGL
VVSCAAATMPKEIWLDPTTEEARAARGRLTLACVPALGLVTNVWQTGQMSIDEVEKCIDA
CQEKCRDIHAVVAQALLESQTG
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggcatccagtgcatttgaccgaagacgaataaatgggcctgaggagagcttcactcct
atttatgcgtctgatgaagaggaaggagagcagcttggagtaggtccttcgaaagggcga
cgaggacgatcggcttcggatattcgcccaattttccttaagacggggttgataagccaa
gcaaatggatctgcatatattgagactgagaagacgaagattgcatgtgcagtgtatggc
cctcgacagtctaagacctcgacttatcatgaaaaaggaaaactacacgtcgaagtcaag
ttcgctcctttctcatgtgcgaagcgtcgagctccaatgcgggacgcagaagaccgctcc
gtctcaatcctaatccaacaatcactcaccccagccattcgcttagaactcattcccaaa
tccagtatcgatatattcctattcgtcattgagaatgatggaattgaagggtgtgtttcg
gcgggagctattgcagcgagtacggctcttgcgcatgcgaggattgatatgcttggattg
gttgtttcgtgtgctgctgcgacgatgccaaaagagatatggctcgacccaactacagaa
gaagcgcgcgctgcacgaggtcggcttacactagcttgtgttcctgcgttgggacttgta
acgaacgtgtggcagacgggacagatgagtattgatgaagtggagaagtgcattgatgct
tgtcaggaaaaatgtcgagatattcatgctgttgtagctcaggctcttttggaatcccag
actggttga
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