Fomitiporia mediterranea: FOMMEDRAFT_137600
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Entry
FOMMEDRAFT_137600 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
FOMMEDRAFT_137600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_137600
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_137600
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
FOMMEDRAFT_137600
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
FOMMEDRAFT_137600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_4
zf-CCCH_12
zf-CCCH_11
zf-CCCH_RBM22
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
18672140
NCBI-ProteinID:
XP_007272264
JGI:
Fomme1_137600
UniProt:
R7SGN9
LinkDB
All DBs
Position
Unknown
AA seq
248 aa
AA seq
DB search
MTMQDPLAGASTLKDIVRPQFHQVSLSADNFVKYTIGVKLDKDDQICRLALTPAGCPLGP
LQCPLRHTNPSPQNFQPPKQVSMHPRDRKRLATVCKHWLRGLCKKGDACEFLHEYNLRRM
PECWWYAKFGYCQAGDECLYAHPKEKKIECPDYKRGFCKLGTCSFFNVNIILNSFRTSLP
SKTRQTGCMQNYLTGYCPLKQEYTRGHPKPDLPTPKDYEPPEAPSQRDLDPPPPGYGRYT
GFDRNANL
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcaagatcccttagctggtgcatctactttgaaagacattgttcgacctcaa
ttccatcaggtcagccttagtgctgacaacttcgtaaagtataccattggtgtaaaactc
gataaagatgatcagatttgtcgactggcccttactcctgcaggatgtcccctagggcct
ttacaatgtccgctgcgacatacaaatccgtcaccacagaatttccaaccaccaaagcaa
gtatctatgcacccgcgagaccgtaaacgactcgctacggtttgtaagcactggcttcgt
ggtttatgcaagaagggtgatgcctgcgagtttttgcacgagtataacttaagacggatg
cctgagtgttggtggtacgcaaagtttggttactgtcaagcaggtgatgaatgcctctat
gcccatccgaaggagaagaagatagaatgtccggactacaagagaggtttctgcaagctt
ggtacgtgtagcttctttaatgtaaatataatactaaactctttcaggacctcattgccc
tcgaaaacacgtcagacgggttgcatgcaaaattatttgaccgggtactgtcctttgaaa
caagagtacactcgtggacacccgaagcccgaccttccaaccccgaaggactatgagcct
cccgaggctccctcacaaagagacttagaccctccccctccaggctacggaaggtacact
ggttttgatcggaacgcaaatctctaa
DBGET
integrated database retrieval system
