KEGG   Fomitiporia mediterranea: FOMMEDRAFT_137613
Entry
FOMMEDRAFT_137613 CDS       T03132                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
fme  Fomitiporia mediterranea
Pathway
fme03020  RNA polymerase
fme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOMMEDRAFT_137613
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_137613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_137613
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_137613
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_137613
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     FOMMEDRAFT_137613
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FOMMEDRAFT_137613
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FOMMEDRAFT_137613
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18672143
NCBI-ProteinID: XP_007261162
JGI: Fomme1_137613
LinkDB
Position
Unknown
AA seq 170 aa
MFFIKELTHTILLHPSYFGPRMLQFLETKLYADVEGTCSGQFGYIIAVVSVLDIGKGMVL
PGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNVNKMGFFAEVGPLTVFVSHQLIHPDMKFD
PNSNPPSFASDEQIIEKNTKVRLKIVGTRVDATEIFAIGTIKEDHLGVIE
NT seq 513 nt   +upstreamnt  +downstreamnt
atgtttttcattaaagagctaacacacacaatcctgttacatccgtcttacttcgggcct
cgcatgctacagttccttgagacgaaactatacgcagacgttgaaggaacatgttcgggc
caatttgggtatattatcgctgtcgtcagtgtattagacattgggaagggtatggtgctt
cctggtagtgggcaagccgaatttgtgacgcgctaccgtgcaattgtgttcaagccgttt
aaaggagaggttgtggatggcgtagtaaataacgttaacaagatggggttcttcgcagaa
gttggaccattgacggttttcgtctcgcatcaactaatacaccctgacatgaaatttgat
cccaactcaaatccgccatcctttgcatcagacgaacagatcatcgagaaaaatacgaag
gtgcgattaaagatcgttggtacgcgagttgacgcgacagaaatttttgctattggtacc
atcaaggaagaccacttgggagttatagaatag

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