Fomitiporia mediterranea: FOMMEDRAFT_137998
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Entry
FOMMEDRAFT_137998 CDS
T03132
Name
(RefSeq) RNA-binding domain-containing protein
KO
K14573
nucleolar protein 4
Organism
fme
Fomitiporia mediterranea
Pathway
fme03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FOMMEDRAFT_137998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_137998
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
FOMMEDRAFT_137998
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_YTH1
PaaX
Motif
Other DBs
NCBI-GeneID:
18672194
NCBI-ProteinID:
XP_007261799
JGI:
Fomme1_137998
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MSEDSVTLGKRKERNVDEDRPVGSTLFVSNLPYSITSTDLKTLFSDYAPVRSAFVVLENN
VSKGVGYVSFAIKEDAATTLETIENDGLELNGRKLRVQMADRKSKDGSDKKVKSERHTPV
VAHAHAPRTKLEKDPDAIRTIVISGLPSSIDKKTLWKKVRKLEGAENVELVEESGIAHAR
FSTPSNASHAVEKLHAHVFKGIILSVTLKKRLENLTKTTLKLENNDKSVTPSRASRLIVR
NVPWNISENDLRSLFLPFGPVYSIDIPMDKTTNCEDSKSESTKTRAKGFAFVWFFSKKDA
EHAIAGVNGRAVEAGSIVAPTMNKKERQRLRRELRKKKSEAGDRETAEGGDKSDVDDQRE
DDVDKGIETHGSARILAVDWALSKSKWEEAKAKVLSDQSKETADDNEGLDSELSDEDEIS
GETADSDEGGNEDDEDERSEAEVAIKPILPQTDVGTTIFVRNVPFDATEDELRILFRAFG
PLRYARITMDSDTGRSRGTGFVCFWNKEDADKAIHQSELLSRETGTASPKKNPFSLPSLL
TPDPSSSLAQSLVLHGRTLDVSRAVTRDAAVRLKDEGERQREKADKRNLYLLREGVIFPG
TPAEATLGPGEIEKRTASYNARRALLKSNPSLYVSKTRLSIRQLPLFVSERALKRLGIHA
MRAFEEEVKQGERQPLSADELRAEEDIHAQNEGSEICTENKVNRRKAKKGERDTGIKQAK
VVRQSDRVDALTGKGRSRGYGFLETNEHSDALRVLRWANNNPLVGPLMEGWWKSEVEDLI
KTLERSMPKDDDERENVEARVRRLKNELEQLKSGERRKGRKTLIVEFSIENAQVVNRRKD
KMEGEKSATKRTRSAPDNELDEDHNSADMRPSKRQKVEKRSGSTRTSNAEGEKTTGKDAR
PKNAIRSIIGRKRKMRKTKAKA
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagactctgtcaccttaggcaagcgcaaggaaagaaatgtagatgaagacagg
ccggttgggtccacgcttttcgtctcaaacctcccgtactccataacatcgacggacttg
aaaacactgttctctgactatgcgcccgtgcggtcggcgttcgtggtactggagaacaac
gtctcgaagggtgtcggatatgtctcgtttgcaatcaaggaagatgcagcaacaactttg
gagaccattgaaaacgacgggctggaattaaatggccgaaagcttcgagtgcaaatggca
gaccgtaagtccaaggatggctcggacaaaaaggtcaagagcgagcgccatacaccagta
gttgcccatgcccatgcccctcgtacaaaacttgagaaagatccggatgctattcggaca
atcgtcatctcgggactgccatcctcaatcgacaagaagacgctttggaagaaagtgcga
aagcttgagggtgctgagaacgtagaacttgttgaagaatccggcatagctcatgcccgc
ttttcgaccccttcgaacgcctcacatgctgttgagaaactgcatgctcatgtctttaag
ggcattattctttccgtgactttgaagaagcgcctcgaaaacttgacgaagacaactctc
aagctggaaaataacgacaagtccgtcacgccaagtcgagcaagcagactgattgtacgc
aatgtaccttggaatatcagcgagaacgatcttcgttcactttttttgccattcggacct
gtctattccatcgacatacccatggacaaaacgacgaattgtgaggattcgaagagcgaa
agcaccaagacgcgcgcgaagggttttgcattcgtatggttcttctcgaaaaaagatgca
gagcacgcgatagctggtgtcaatggtcgtgcagtcgaagccggttcaattgttgctcca
acaatgaacaaaaaggagcgccaaaggttacgaagagaactccggaagaagaaatctgaa
gcaggagatagggaaactgctgaaggtggcgataaatcagatgtcgatgaccaaagagaa
gatgacgtggacaaaggcattgaaacacacgggtcagcgcgaatactagctgttgactgg
gctctgagcaaatccaagtgggaagaagcaaaagcaaaagtgttgagcgatcaatccaaa
gagactgctgacgataacgaaggactggactcggaattatcagatgaggacgagatcagt
ggagaaacagctgatagtgatgaaggtggcaatgaggacgatgaggatgaacgttccgaa
gcggaagtggcaattaaaccaatacttccccaaacagacgtcggcacaacaatattcgtg
cgtaatgtaccttttgatgccacagaggacgagcttcgtatcttgtttcgtgcatttggg
cctttacgctatgcgcgtattactatggactcggatacaggccgctcacgtgggacaggt
ttcgtctgcttctggaacaaggaggacgcggacaaggcaattcaccagagcgaactgctc
agtcgcgagactggtactgcctccccgaagaagaacccgttttcattaccctcactactc
acaccagatccttcgtcatcgttagcgcagtcacttgttttacatggacgtactctagat
gtctctagagcagtaactcgtgatgcagcagtgcggttgaaggacgagggagaacgacaa
cgggagaaagcggacaagcggaatctataccttctccgcgagggtgtcatattccctggc
acacccgccgaggcaactttaggccctggtgagattgagaagcgcactgcgtcatacaat
gcccgtcgggcactgttgaaatcaaatccgtctctttatgtgtcgaaaacacgtctatcg
atacgccaattgccattgtttgtctccgagcgtgctctcaaacgccttggtatccacgca
atgcgagcttttgaggaagaggtcaagcaaggagaacgccagcctttgtccgctgacgag
ctacgtgcggaagaggatattcacgcccaaaacgaaggcagtgaaatatgtaccgaaaat
aaagtgaatagacgtaaagcaaagaagggggaaagggacacgggtattaagcaggccaag
gtcgtgaggcagtcagatcgtgtcgacgctttgacaggtaaaggccggagtcgaggctat
ggctttttggaaacgaatgaacatagtgacgcactccgtgtattgagatgggcaaacaac
aacccgttggtgggtccactcatggaaggctggtggaagagcgaggtagaggacctcata
aaaactcttgagagatccatgccgaaagatgacgatgagcgcgagaacgttgaagcgcgt
gtacgccgtctgaagaatgaacttgaacagttgaagtctggcgaacgtcgcaaaggcagg
aaaacgctgattgtggaattctccattgaaaatgctcaggtagtgaatagacgtaaggac
aagatggagggcgagaaatcggcaacgaagcggacgcgctctgcgcccgacaatgaactt
gatgaggatcacaattctgcagacatgagaccatctaaaaggcagaaggtggagaagcgc
tcagggtccacaaggacatcgaatgcggagggcgagaagacaaccggaaaagatgccagg
ccaaaaaatgcgattaggagcatcattggtcgtaaaaggaagatgcgaaagacaaaagca
aaggcctaa
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