Fomitiporia mediterranea: FOMMEDRAFT_138021
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Entry
FOMMEDRAFT_138021 CDS
T03132
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_138021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_138021
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_138021
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_138021
03016 Transfer RNA biogenesis [BR:
fme03016
]
FOMMEDRAFT_138021
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOMMEDRAFT_138021
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FOMMEDRAFT_138021
Spliceosome [BR:
fme03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
FOMMEDRAFT_138021
Complex C
U4/U6.U5 tri-SnRNP related factors
FOMMEDRAFT_138021
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOMMEDRAFT_138021
Transfer RNA biogenesis [BR:
fme03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FOMMEDRAFT_138021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Ald_deCOase
Motif
Other DBs
NCBI-GeneID:
18672199
NCBI-ProteinID:
XP_007261860
JGI:
Fomme1_138021
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MASPAPVVVDEFETEAKREVAASAGLTGQVEAGSRLELRHQVRHQVAVPPGYNYTPIANH
VPPAKPVREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEYAIAQCLENKQRVI
YTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYRGSEIMREV
AWVIFDEIHYMRDKERGVVWEETIILLPHTVRYVFLSATIPNAMQFAEWICKSHEQPCHV
VYTDFRPTPLQHYLFPQGGEGIYLVVNEKGEFREDNFSKAMGSLVDKQGDDPADPKAGKG
RKGKTKKGGEKKGPSDISKIIKMIMLKNFNPVIVFAFSKRECESLALTMSKLEFNSAEEQ
DLITNIFNNAIDNLAPDDRQLPQISNILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIK
VLFATETFSIGLNMPAKTVVFTDVKKFDGHEFRNLSSGEYIQMSGRAGRRGLDDRGVVIM
MVDEKLEPSAAKNMIKGEADRLDSAFHLGYNMVLNLMKVEGISPEFMLERCFYQFQNSAN
IPILEKELKALEEKKASMKIPDEKLVAEYYEYRTQLDQMGADFREVITHPTYSLPFLQPG
RLVKVRYQKLDFGWGVIINYQKRLPPKNRPGPTVEEVPPHEQYIVDVLLNCSKGSSLPKD
RNVTTATPNGVQPCPPGEKGEPLVVPILLSTIEGISLIRIFLPKDLRPLQARETAWKSIL
EVHRRMADGITLLDPIQNMNIKDDKFKQLVKKIEIMEGKMFSSPLHKDPRLPELYTLYHE
KRQCQTRIRELNKRVQATLDIMQLEELKSRKRVLRRLGFTSSSDIVDMKGRVACEISTGD
ELLLTELIFNGVFNPLLPEQCAALLSCFVFEEKSQQVTKLSEELAAPLRIMQGMARRIAK
VMIESKMTIKEDDYVKSFKVELMDAVIQWCRGASFSEICKLTDQFEGNVIRVFRRLQELL
RQMSQAAKVIGNDELREKFDKALEMLARPNSVIFCSSLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccagcaccagtagttgtggatgagttcgagacggaggcgaaacgcgaagtg
gcagcgagtgctgggttaacagggcaagttgaagcaggctcacgactcgaattgaggcat
caggtgcgacatcaagttgccgtgcctcctggctacaactacactcccattgccaaccac
gtccctcctgcgaaacctgtgcgagagtataagttcacactcgatcccttccaacaagtt
tcggtacacgcgattcagcggaacgaaagtgtgctcgtgtctgcgcatactagtgctgga
aagactgttgtcgcggaatatgccatcgcacaatgtttagagaataagcaacgtgtaatt
tatacaagtccgatcaaggcactgagcaatcaaaagtaccgagaaatgctcgcggaattt
ggagacgtaggactaatgactggagatgttacgattaatccgaccgcaacctgtctggtt
atgactactgaaattctacgatccatgctttatcggggctctgaaatcatgcgagaggtg
gcatgggttatcttcgatgaaatccactatatgcgagacaaggagcggggcgtagtatgg
gaagaaacaatcatattactccctcacactgttcgctatgtgttcctttccgcgaccata
ccaaacgccatgcaattcgctgaatggatatgcaaatctcacgaacaaccttgccatgtc
gtatataccgacttccgaccaactcccttacaacactacctcttcccacaaggtggagag
ggtatttaccttgtcgtaaatgagaagggcgaattcagagaggacaacttcagcaaggcg
atgggctctcttgtggataaacagggtgatgatccagctgaccccaaggctgggaaagga
cggaaagggaagacgaagaagggcggcgagaaaaaaggtccttcggatatctccaagatt
attaagatgatcatgttgaagaacttcaaccccgttattgtctttgcgtttagcaaacga
gaatgcgaatcgcttgcattaacgatgtcaaaactcgagttcaatagtgcagaggaacag
gatttgattaccaatatcttcaacaacgctatcgacaatcttgcacctgatgaccgccag
cttccccaaatatccaacatccttccgctgctgaagcgcggcattggtatccaccatgga
ggtcttctccctatccttaaggaagtcatcgaaattctattccaggagggtcttatcaaa
gtactcttcgcgacagagacattctccatcggtctgaatatgcctgcgaagactgtcgtc
ttcaccgatgtcaagaaattcgatggtcacgagtttcgaaatctgtcatctggtgaatat
attcagatgtctggtcgagcaggacgtcgtggtctcgatgacagaggcgttgttataatg
atggtcgatgagaagcttgaaccaagcgcggcgaaaaacatgatcaaaggcgaggcagac
cgactagactctgcgttccatctaggctacaacatggtgcttaatcttatgaaggtcgaa
ggcattagccccgagttcatgttagaacggtgtttctatcaatttcaaaatagcgcaaat
atccctattttagagaaagaactgaaagctctggaagaaaagaaggcttcaatgaagatt
cccgatgagaaacttgtcgcagagtattatgaataccgaacgcaacttgatcaaatgggt
gctgacttccgagaagtaatcacccatcctacatacagtctccctttcctccaaccaggt
cgattagtcaaagtcagatatcagaagcttgactttggatggggtgtgatcatcaactat
caaaaacgcctcccaccaaagaatcgtcccggaccaacagtcgaagaggtccctcctcat
gagcaatacatcgttgatgtccttctcaactgctcaaaaggctcatccttaccaaaagat
cgcaacgtaaccactgcaacacccaacggtgttcagccttgccctccgggggagaagggc
gaaccgctggttgttcccatcttactatcaaccatcgagggcatcagtcttattcgaata
ttcctgccgaaggaccttcgtccgcttcaggcgcgggagacagcatggaagagcatactt
gaagtacatcgacgtatggccgacgggataacgttattagatcctatacaaaacatgaac
atcaaggatgacaagttcaagcagctcgtcaaaaaaatcgagatcatggaaggcaagatg
ttctcaagccctctccacaaagaccctcgattaccggaactttataccctgtaccatgag
aaacggcaatgccaaacccgaattcgcgagttgaacaagcgcgtgcaagcaacgcttgat
atcatgcaacttgaggagctcaagagtcgaaaacgtgtattacggcggttaggctttacg
tcatcgtcggacattgttgatatgaaaggtcgtgtggcttgcgagatcagtacaggtgac
gagctgctcctcaccgagctcatcttcaatggcgttttcaatcctctactcccggagcaa
tgtgcggctctcttaagctgcttcgtattcgaagaaaagagccaacaagtaacgaagtta
tctgaggagctcgctgcgccgttgcgtataatgcaaggaatggcccgacgaatagcaaaa
gtcatgatcgaatcgaaaatgactattaaggaggacgattatgttaagtcgtttaaggtt
gagcttatggatgctgtcatccaatggtgtcgtggcgcctcgttctctgagatctgcaaa
ttgacagatcaattcgagggcaacgtcatccgggtgttccgccgtctacaagaactcctt
cgacaaatgtcccaggcggcaaaagtcattggaaatgacgaactgcgggagaagtttgac
aaggctcttgagatgcttgcacgaccaaattctgtaattttctgttcttcgctgtatcta
tag
DBGET
integrated database retrieval system
