KEGG   Fomitiporia mediterranea: FOMMEDRAFT_138601
Entry
FOMMEDRAFT_138601 CDS       T03132                                 
Name
(RefSeq) RPB5 subunit of DNA-directed RNA polymerase
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
fme  Fomitiporia mediterranea
Pathway
fme03020  RNA polymerase
fme03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOMMEDRAFT_138601
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_138601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fme03021]
    FOMMEDRAFT_138601
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_138601
Transcription machinery [BR:fme03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     FOMMEDRAFT_138601
  RNA polymerase III system
   RNA polymerase III
     FOMMEDRAFT_138601
  RNA polymerase I system
   RNA polymerase I
     FOMMEDRAFT_138601
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      FOMMEDRAFT_138601
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 18672286
NCBI-ProteinID: XP_007263033
JGI: Fomme1_138601
LinkDB
Position
Unknown
AA seq 212 aa
MTDAVGGPDEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSGSVDRNQL
NFFATHESDPSDHIFIYFSDQKSVGIKTMQKVCIILEEKSINKGIVIFPGTMTPSARKFI
VQMSVRYRLEEFSESDLLVNITRHILVPHHEVLTPEEKDTLLEKYRLKETQLPRIQLADP
VARYYGLRRGQVVKITRPSETAGRYASYRICF
NT seq 639 nt   +upstreamnt  +downstreamnt
atgacggacgcagttggtggaccagacgaagctgctcgtttatggcgagtaaacaggacg
attcacgaactcatcaaagacaggggctttcaagtgtctgatgaagaaatcgaagtggat
ttggtgactttcaaacaacaattcgcgaacagtagtggttctgtcgatcgaaaccagctc
aacttcttcgcaacgcacgaatcagacccatcagaccacattttcatttacttctcagac
cagaagagcgtgggtattaagacgatgcagaaggtttgtatcatcttggaagagaagtcc
attaacaaagggatcgtaatctttccggggaccatgacgccgtcggctcgcaagttcatc
gtccagatgtccgtccgataccgcctcgaagagttctccgaatccgaccttctagtaaac
atcacccgacacatcctcgtcccccatcacgaagtcctcacgccagaggagaaagacacg
ctcttagaaaaatatcgcttaaaggaaacacaacttccccgcatccagctcgccgatccc
gtagcacgatattacggtcttcgaagaggccaagtcgtcaaaatcactcggccgtcggag
actgcgggtcggtacgcgagttatcgtatatgcttctag

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