Fomitiporia mediterranea: FOMMEDRAFT_139584
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Entry
FOMMEDRAFT_139584 CDS
T03132
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_139584
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_139584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_139584
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_139584
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
FOMMEDRAFT_139584
mRNA degradation factors
5'-3' decay
Lsm complex
FOMMEDRAFT_139584
Spliceosome [BR:
fme03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
FOMMEDRAFT_139584
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18672395
NCBI-ProteinID:
XP_007264724
JGI:
Fomme1_139584
LinkDB
All DBs
Position
Unknown
AA seq
134 aa
AA seq
DB search
MADRARSSLSSLFGRGLARGFASRGGPAARGGRVGAQGAQQADKPKREAILDLQKYMNER
IRVKFTGGREVTGILKGYDQLLNLVLDDVEEQLHEPEPRKRSLGLVVLRGPTITLLNPVD
GFEEIENPFAEQQQ
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagggcacgttcatctctttcttcgctttttggacgcggtttagcaaggggt
tttgcgtcccgtggtggaccagccgctcgaggcggtcgagtcggcgcgcaaggcgcacag
caggcagacaaaccaaaacgtgaagctatcctcgacctccaaaaatacatgaacgaacgg
atacgtgtcaagtttactggtggacgcgaagtgacaggcattctgaaaggctatgatcaa
ttactcaaccttgtacttgatgatgtcgaagagcagcttcatgaacctgaaccacgcaag
cggtcccttggtttagttgtccttcgcggacccaccattacattgcttaatcccgttgac
ggtttcgaagaaatagaaaatccgttcgcagagcagcaacaatga
DBGET
integrated database retrieval system
