Fomitiporia mediterranea: FOMMEDRAFT_140221
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Entry
FOMMEDRAFT_140221 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K18725
nucleoporin POM152
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_140221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_140221
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
FOMMEDRAFT_140221
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig-like_POM152
Ig_Pom152
Ig-like_Pom152_9
Ig-like_Pom152_1
TMD_POM152
Motif
Other DBs
NCBI-GeneID:
18672482
NCBI-ProteinID:
XP_007265791
JGI:
Fomme1_140221
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MSSKDPPPVKNPIEKHKGPLIPESIVDAPAQRLYIVSLGLLCQAIKIFDWLYSLVVEPSV
NLTLKWILVDISYCLILKRLRIPKLNYAVTAVLLQILILSLVNGILFGTIHVGVSSYSLS
SSARDYYRRELSTSGRLVSLRDLLSSDDHLKGEHTVRMSPTGTAKLNPDGQSYCLSSSSN
AVLIPVLLNNTKPSHIRYSITRPGNGKVDYVDLSSKELRSIEQQRLDTLRSTKASASTED
EESDVDWDEEDEEILKIQDHPKGSQKELEETQSLTYLRVNKLGTVQLERVLEMSTSNMAR
IFRSEVQVVPCPRAAFVPDGLVKGNAIRCVGSKEELSVQVSGVPPLNLRWHRYINGRREV
FSVDRMEGEPDKQGQIHDLRLPLDMQLDVPGSHEYVLDSLSDGLGNVQSLMPAITRRGET
PDVSASQLKETTRSVSVLKRAAMSFRDCAPGNPADLLIGSETQLTISAREYDSQDGPWDV
KVNFQPGQDTTEKKPPKPWVKTVSSPAGRHQLTLTANAPGEYSILDVKGQYCPGDVLSPE
TCRVVLQPHPTAKIDWKRIHECSGDTGVSAYLVLHGKPPFQVFYQQKRNNEQAKEMSRTF
QGSRGEITLQPESSGNYTYTFTSLSDANYKRVKLEGPSITQVVHPLASASFRSVGGSRKS
INSCSGNTVDVDVDLRGDGPWNLEVQAVGPKGSETIRLKDLKNSREKITVPIPSDIDRYG
GTFQIDLVNVEDSYGCRKDLAVPGLSVNVRRVKPNARFYSKDQIRETTVLEGQEARLPMR
LTGEGPWKVKYQLSELNNATRTAILKTPNDYLVVKEKGSYRLTDVSDSQCPGSIVESEAD
FKVAWIPRPFVKLSPETEVVYHSFNGSHVRAPICEGQEDHVDLDVTGRPPFQIGYNVATR
NEAGGTRILEQPILSSINSRARLQLYTSQAGRMYYEVKQIGDANYPLDQNRGHVIPRQER
LLFEQEVIGRPSAQFKKQARLSHCLGDAFVPLDSYSSDDMIVLDGKPPFHLELSVKNLAA
SEEHRQTVEIWTPQWKVNLPNYLFSTIGPHLVTIESVRDASSCMQAVPDPLRTSIWVDVA
ESAAIVPFDRREHFCVGDVTQFQLEGIPPWTIGFKANNKHHEQVVKESPFALVHQNPGPF
SITSVSHQQQQCKTTVDNIHFDVHPLPAAQVAAGREYFEDIHEGTQAQITFSLVGEPPFT
FTYQRAERPTRKGAKPGKVLEMHTVSGVMSHEYSIYSALEGTWTVTFISDKYCRYPPTQP
DGLGDRTKS
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaaagatcctcctcccgtgaagaatccaatcgaaaaacataagggccctctg
ataccagagtcaattgtcgacgcgccagctcaacggctctacattgttagccttggactc
ctttgccaggcaataaaaatattcgactggctctacagccttgttgtagaaccctctgtc
aatcttacgctcaagtggattcttgtcgacatttcctactgcctgatcctcaagcgccta
cgaatccccaagctcaactatgcagtaacagcagtgctattgcaaatactcatcctttcg
cttgtgaatggaatcttgtttgggactatccatgtcggcgtatcttcatattctctgtcc
tcgtctgcgagggactactatcgaagagagctgtctacaagcggtcgtttggttagctta
cgagacttattgtccagcgatgaccatttgaagggagagcacaccgtcagaatgtcgcct
accggcactgccaagttaaatccggacgggcaatcatactgtctcagttcttcgtcaaac
gcagtcctcattcctgttctcctcaacaacacgaagccctctcatatacgctatagcatc
actcgtccagggaacgggaaagtggattatgtggacttaagttcaaaagaattgcgatct
attgagcaacagcgtttagatactcttcggtcaacgaaggcttctgcatccacagaagat
gaggaaagcgatgtggattgggacgaggaggacgaagagattctgaagatacaggatcac
ccgaagggttcccagaaggagcttgaagaaacccaatcacttacgtacctaagagtgaat
aaactgggcaccgtacaactcgagcgtgtgctagaaatgagtacatcgaatatggctcgc
atcttccgcagcgaagtccaggtcgttccttgccctcgagcagcatttgttcccgatggt
cttgtgaaggggaatgccattcgttgtgttggctctaaggaagagctatctgttcaagta
tctggtgtaccgccgctgaacttgagatggcatagatacataaacggcagaagagaagta
ttttctgtagataggatggaaggcgaacctgataagcagggtcaaattcatgatctcaga
ttacctctcgacatgcaactggatgtcccaggatctcatgaatatgtgctagactctctt
tctgatggactcggtaacgtacaatccttaatgccagcaatcactcgcagaggagaaact
ccggacgtcagtgcctcccagttgaaggagacgactcggtccgtttctgtcttgaagcgt
gccgcaatgtccttcagagactgtgcacctggaaaccctgcagatcttctcatcggttcg
gaaacgcagctgacgatttctgcgcgcgaatatgacagccaagatggtccatgggacgtg
aaagtaaatttccagccaggtcaagacactacagagaaaaagccacctaaaccatgggtg
aagacagtcagttcccctgctggaagacaccagcttacgttaactgcgaatgcacctgga
gaatactcaatcttggatgtaaagggacaatattgtcctggggatgttctcagtccagaa
acatgtcgagtagtgcttcagcctcatccaactgcgaaaattgactggaaacgaatccat
gaatgctctggagatacgggcgtttcagcataccttgtccttcatggcaaaccgccattc
caagtattctaccaacagaagcggaataacgaacaggccaaggaaatgtcgcgtactttc
cagggatcaagaggcgaaataaccctccagccagaaagtagtggcaattacacttatacc
ttcacttcgttaagtgatgccaactacaaacgggtgaagctcgaaggacctagtatcaca
caggtcgtgcacccgcttgcatcggctagtttcagaagcgtaggtggcagcaggaagtct
attaacagctgttctggaaatactgttgacgtcgacgttgaccttcgtggagacggtcca
tggaatctggaagttcaagcagttggccctaagggatcagaaacaatacgcttaaaggac
cttaagaacagtcgagagaagatcacggtccccattccatccgatattgatcgatatggc
ggcacgttccagattgatcttgttaatgtcgaggattcctacgggtgcagaaaagacctc
gctgttccaggattgtctgtcaatgtccgccgagtgaagccaaatgctcgattctattcg
aaggaccaaatccgagaaacaactgttctggagggccaagaagctcgtttaccgatgcga
ttgacgggcgagggcccatggaaagtgaaatatcaactatccgaattaaacaacgcaacg
cgaaccgctatcttgaaaacccctaatgattacctagtagtcaaagagaaggggtcatat
cgattgaccgatgtgtcagattctcaatgcccaggctcgatcgtggaaagcgaagcggac
ttcaaggtcgcttggatacctcgcccattcgtgaagctctccccagagaccgaagtggta
taccacagctttaacggctctcatgttcgtgcaccgatctgtgaaggacaggaagaccac
gtcgatttggacgtgacaggacgacctcccttccaaatcgggtacaacgttgcaactcga
aacgaggcaggagggactcgtatcctcgaacagcccatcctcagcagtataaactcccgc
gcccgccttcagctctacacctctcaagcaggtcgtatgtactacgaagtcaaacaaatc
ggtgatgccaattacccactcgaccaaaatcgtggtcacgtcatcccacgtcaagaacgt
ctcttattcgaacaggaagtaatcggcagaccttcggcacagttcaagaaacaagcgagg
ttatcacattgtcttggagatgcgtttgtcccgttagactcgtactcttcagacgacatg
atcgtcttagacggaaagccacccttccacctcgagctatcagtaaagaacctcgctgcg
agtgaagaacaccgtcaaacagtcgagatttggacaccacaatggaaagtcaacttaccg
aattatctcttcagtactatcggtccgcacttggttacgatcgagtctgtgagagatgcg
tcgtcgtgtatgcaggctgttcctgatccattgaggacgtcgatttgggttgacgtggct
gaaagtgcggcgatcgtaccgtttgaccgacgagaacacttttgtgttggtgatgttact
caattccagcttgaaggtattccaccatggactatcgggttcaaagccaacaacaaacac
cacgaacaagtagtcaaagaatctcccttcgcactcgtgcaccaaaaccccggtcccttc
tcaatcacttccgtctctcaccaacaacaacaatgcaaaacaacagtggacaatatccac
ttcgacgtccaccctctacccgcggctcaagttgcagctggtcgcgaatactttgaagat
atccacgaagggacacaagcacagattacgttctcgcttgtcggagaaccgcccttcacg
ttcacttatcagcgtgcagaacggccgactcggaagggtgcgaagcctggtaaagtgctt
gagatgcatacggtgtcaggtgtgatgagccatgaatattcgatttactctgctttggaa
ggaacctggacagtcactttcatctctgacaaatattgtcggtatccaccaacgcaacca
gatggactgggagatagaacaaagagctga
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