KEGG   Fomitiporia mediterranea: FOMMEDRAFT_141089
Entry
FOMMEDRAFT_141089 CDS       T03132                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
fme  Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:fme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:fme03009]
    FOMMEDRAFT_141089
   04121 Ubiquitin system [BR:fme04121]
    FOMMEDRAFT_141089
Ribosome biogenesis [BR:fme03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    FOMMEDRAFT_141089
Ubiquitin system [BR:fme04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     FOMMEDRAFT_141089
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Sof1 WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 EIF3I Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 NBCH_WD40 Beta-prop_RIG_1st WD40_RFWD3 Beta-prop_SCAP eIF2A Beta-prop_IFT122_1st Asp_Glu_race
Other DBs
NCBI-GeneID: 18672578
NCBI-ProteinID: XP_007267254
JGI: Fomme1_141089
LinkDB
Position
Unknown
AA seq 458 aa
MKIKVLQHSPTEHMPQRRGDPMPRSRNLDPNVHPFARHRERMRALNAAKMERMFSKPFVG
SLDGHIDAVEVLARKPHSLNVVASGSWDGEIILHDVPQRRHLLRLPGAHKGKVSGLCWAE
GDRLLSCGVDRNVKLWDTRTLSDADGEMEIDAGPSEGRKPLGVFPGKFAFNSIDHHRTDP
LFATASNTVQVWDETKSTAISNLTHSTSTETVSALRFNLSESSILASVGSDRTFTLYDIR
TGKAERRVIMRFRANALAWSPTFPTSVLLASEDHNLYTFDIRNLNTPTQIYKAHVAAVMS
CDWSPTGTEFVSGGWDRTVRIWKEGVGRAPEVYHTKRMQRVTSSIYTADARFVLTGSDDG
NVRIWKARASDKLGVVTTREKAAMEYRDSLRARWGMDTEIAKVTRSRRLPKPVYKAAQLK
HTMLEAQRVKEERRRKHTRAGETKPKAEKKKVVIAEQG
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgaaaataaaagttctccagcattcgccaacagagcatatgccacagcgtaggggagat
cctatgcccagatcacgtaacttggatcccaacgttcacccgttcgctcgtcaccgcgaa
aggatgcgtgcattgaatgcagcgaagatggagcgaatgttttcgaagccatttgtaggg
agcctagatgggcatatagatgcggtggaagttttagctcgaaaacctcactcgctgaac
gtggttgcaagtggaagttgggatggagaaataatcctgcatgatgtccctcaaagacga
catctactacgattacctggcgctcataaagggaaggtctccggactgtgttgggcggaa
ggcgatcggcttttgagttgtggtgtagatcgaaatgtgaaactctgggatacgcgcacc
ttatcagatgcggatggtgagatggagattgacgctggaccctccgagggtcgaaaaccg
ttaggagtctttcctggaaaatttgcattcaactcaatagatcaccaccgtaccgatccc
ctttttgccaccgcttcaaatacagtccaagtatgggacgagacaaagagcacagcgata
tctaatcttacacattctacttccacggagactgtttccgccctccgcttcaacctctcc
gaatcctccatcctcgcgtccgtaggttccgatcgcacgtttacactgtacgatatacga
actggcaaggcagagcgccgagttatcatgcgattccgtgcaaacgcactcgcatggtca
cctactttcccgacttctgttctcctggcatcggaggatcataacttgtacacattcgat
attcgaaatctaaacacgccaacacagatctataaggcacacgttgccgcggtgatgtct
tgtgattggagtccgacaggtactgagtttgtttctggcggatgggatagaaccgttcgc
atatggaaagaaggcgttggacgtgcaccggaggtatatcatacaaagcgtatgcaacga
gtgacttcctcgatatacacggcagatgcacgcttcgtattaactggttcagacgatggc
aacgttcgtatctggaaagctcgcgcttcagataaacttggcgtcgtaacgacgcgtgag
aaggctgcaatggaatatcgtgatagtttacgagcacgatggggtatggacacggagatt
gcgaaagttacgcggagtcgtcgtttaccaaagccagtttacaaggccgcccagctcaag
catactatgctcgaagctcagcgcgtcaaagaggaacgtcggcggaagcatacgcgtgca
ggcgaaaccaaaccgaaagcggagaaaaagaaggtcgtcattgcggaacaaggctaa

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