Fomitiporia mediterranea: FOMMEDRAFT_141502
Help
Entry
FOMMEDRAFT_141502 CDS
T03132
Name
(RefSeq) pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fme03016
]
FOMMEDRAFT_141502
Enzymes [BR:
fme01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
FOMMEDRAFT_141502
Transfer RNA biogenesis [BR:
fme03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
FOMMEDRAFT_141502
Prokaryotic type
FOMMEDRAFT_141502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
18672634
NCBI-ProteinID:
XP_007267887
JGI:
Fomme1_141502
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MPKSTVPPLSCSALFGISKPSGPSSMSVINDLKKLVSASRLFVDEESAKVNAERLYSVPD
GEDEGEGGVVERDGRKGGREKGKWKRMRGKGRKGREVEAKMGQGGTLDPLADGVLVVGVN
KGTKKLSEFLDCIKEYRTTCLLGCETDTYDSEGAQVRTAPWKHVTKEKVEAALEQFRGDI
QQTPPVFSALKMDGKPLYEYAREGIPLPRPIERRPVTVHSLEITHWIPGSEHSYEFPTKK
FSEEERAKMVKALRGVELSADAEIKDEPEQQTDSVEGSTGDAKDDGDKPTEERPPVFVLS
MRVSGGTYVRSIVHDVGHALGSAAHVVTLTRSRQGRFVLKPSTKTSTPMLPEVLTNSEVN
DTPEVSEEKSDDAELAKQMERECIPWDVFARAMESRATEEPDEDGWREWEREVMDNLEIV
EGK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatccacggttccgccactctcctgctcggcgttgttcggtatttcaaaacct
tcaggtccgtcaagtatgtcagtcataaacgacttgaagaagttggtctctgcttcgagg
ttgttcgttgatgaagagagcgcgaaggttaatgctgagaggttgtactctgttcctgat
ggagaggatgaaggtgaaggtggagttgttgagagggatggaaggaaaggcgggagggag
aaggggaagtggaagaggatgagggggaagggtaggaaagggagagaggttgaggcgaag
atggggcagggtgggacgcttgaccctcttgcggatggtgtacttgtcgtcggcgtgaat
aaagggacgaagaagctaagcgaattccttgattgtatcaaggaatacaggacgacgtgt
ttactagggtgcgagacggacacgtatgacagtgaaggtgcacaagttcgcacagcaccg
tggaaacacgtaacgaaggagaaagtcgaagctgcgcttgagcagtttcgaggagatatt
caacagacgccacctgtgttttccgcactgaagatggacgggaaaccgctatatgaatat
gcaagagaagggattccacttccgcgacctattgagaggagacctgttacggtgcattca
ctggaaattacacattggatacccggatccgaacattcatacgagttccccacgaagaaa
tttagtgaggaagaacgggcaaagatggtcaaggcattgagaggagtggagctctcagct
gatgcagaaatcaaagacgagcctgagcaacagacagactcagtggaaggttctacaggc
gacgcaaaggatgacggtgacaagccaacggaagaaagaccgcccgtgttcgtacttagc
atgcgtgtttcgggagggacgtatgtgcggagtatcgtacatgacgtcggacatgcactt
ggttctgcagcgcatgttgttacccttacgagatctcgccaagggaggtttgttctgaag
ccgtcaacaaagacatcgacacctatgctgccggaagtgctcaccaactcagaggtcaat
gatacaccagaagtttcagaagagaagtcggatgacgcagaacttgcaaagcagatggag
cgagagtgtataccgtgggatgtgttcgcacgtgcaatggagagccgagctacagaggag
ccagacgaagatggttggagagaatgggaaagggaggtgatggataacttggaaattgta
gaaggaaaataa
DBGET
integrated database retrieval system
