Fomitiporia mediterranea: FOMMEDRAFT_142159
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Entry
FOMMEDRAFT_142159 CDS
T03132
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOMMEDRAFT_142159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_142159
Enzymes [BR:
fme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOMMEDRAFT_142159
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
FOMMEDRAFT_142159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
18672705
NCBI-ProteinID:
XP_007268852
JGI:
Fomme1_142159
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MNIAQPIPSTVQSISFSFLTSEDVRRISVKQITNPILLDELNRPTIGGLYDPALGPSDRK
DICATCRLTHFTCPGHFGHIELPSPIFHPLFMVSMYKLLKGTCTFCHRFKIRRTELVKYV
AKLRLLDHGLLDYANAIDEMKPNVSQNEDGSEDEDTAADESLEEFSRRVKMTTQLFLRMH
PERKRDDYKDGLVFQARKDVIAEFLATTALKRCQNNDCKAFAHSLRKEGHTKIVELDLTT
KQKAQHIQMNLRRNNILHQERHGRQSTQYADEDVSGSEESEGEGEAVFSDEEDGAEPEEK
REALPKSASGKVKTMRGRNERIITPEECRAHLRRLFANEVSMCSLIFGRHGPFARVNTDR
ISPASADIFFMDCLLVSPTRFRPPAKMGDTLFEHPHNELLAKVLNTSYSLRDQADALRAA
NEKDSTVDEVSRRRMLGRLIESLVQLQVDVNSFIDSSKNPQRMRQGKLPPAGVKQNLEKK
EGLFRMNMMGKRVNYSARSVISPDVNIDTNEIGVPPVFARKLTFPEPVTEHNVHLMRELV
TNGHHKYPGASIIELEDGTKQSLEKMNVEERRALANQLLTPQNDLHGSSKMGLTTKTPAV
NKKVYRHLRDGDVLILNRQPTLHKPSMMVHKARVLQGEKTIRMHYANCNSYNADFDGDEM
NIHFPQNELARSEAMFIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTSRDTFFSREEYF
QLLYGALRPEEQTDGRLRTLPPTIWKPVPLWTGKQIISTILLNITPSAAQGLNLTSKAKV
SGDLWGKGSEEGRVVVMDGELLCGILDKSQFGATDYGLVHSCYELYGADIAGRLLGILSR
LLTKFLQHRAFTCRMDDLTLTALGDSQRRSLLQKGKNLGQEGAEENFPSLATMPVSEKKG
ALRAFLRDVLRDDAKMAGLDVTVKKKLAGLTKSIADACMPHGLSRKFPHNHMQMMTQSGA
KGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFKAFETAAIAGGYVASRFLTGVKPQ
EFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDNTVRASDSSILQFHYGGD
CLDVTRQKHLTQFEFAARNERSLVASLRTPSVDHFDDNEGAIKHMKDALKYLRKPKKGKK
LDPAMSVYNPSRNIGATSEKFAQKVEEYIKSNPDHMLKDKNAEAPLWLSKSRKGISHKMF
RMLMNVKYMRSMVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIV
MTASTKPKTPSMTMRVCAGADDKLIKSFCKRASRLALSQIVDKVEVNEKLARTRRRQFSV
AISFYPKDEYREEYDLEPLEILPAFGVAFPQILRREIQLELKKLKADLRTHLSEVGRGRT
EPQVGANPEGDEANANATAVNDDSSEIGDGDADAEKRARQTKQQATYESDEEEDSPSGEF
DDAALEAEFNESADSPDSDDDAMDVDDLTEVDGQSIKDKISEVRNTFFLNLKSASSFKFS
DSGVSFDLEFPSDQPKLLLVGLVEKACNKTIVREISGIADVFLSKDEGKDKQFKLVTNGS
NFQGMWRFANAFEEESGEPVVELNDIYANDIYAGLVAYGVEMARALILKEIQNVFGAYNI
DVDIRHLELIADYMTFDGGYKPFNRKGISTNPSPLLKASYETTAAFISDATLHGDFDDLR
TPSGNIVLGRPSLSGTGVFDIVHSLH
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgctcagccgatcccttcgactgttcagagcatttccttctcgttcttgact
tcggaagatgtacgcaggatctccgtaaaacaaattacgaacccaattctcctagacgag
cttaatcggccaactatcggcggcttatatgatcctgctcttggaccgagtgataggaag
gatatatgcgcaacatgtcgactaacgcattttacgtgtcccgggcattttggtcatatt
gaacttccgtccccgattttccatcctctgttcatggttagcatgtataagttgctaaag
ggaacttgcacattttgtcatagattcaaaatacgacggacagagctagtgaaatacgtt
gcgaaacttcggctccttgatcacggtctcctcgattatgcaaatgcaattgatgagatg
aagccaaacgtctcgcaaaatgaggatggaagtgaggacgaggatacagcagctgatgaa
tctttagaggaattctctcggcgcgtcaaaatgactacccaacttttcttgcgaatgcat
ccagagcgtaaacgtgatgactacaaggatggcttagtctttcaagcacgtaaggacgtt
attgcggagttcctagctactactgctctaaaacgatgccagaacaatgattgtaaagcg
ttcgctcactctttgcgcaaagagggccatacaaaaatcgtcgagctcgatctaacgaca
aaacagaaggctcaacatattcagatgaacctcagaaggaacaacatcctgcaccaagag
cgtcatgggcgacagagcactcaatacgccgatgaagacgtatctggttctgaagaatca
gagggagagggagaagcggttttctccgatgaggaggatggtgctgagcccgaagagaag
agggaagctctcccgaaatctgccagcgggaaagttaaaaccatgcgaggtagaaatgag
cgaataatcactccggaagaatgtcgagctcatcttcgtcgcttatttgctaacgaggtg
tccatgtgttcccttattttcggccgacatggccccttcgcacgtgtcaacacggaccgt
atttcgccagcttctgcggacatattcttcatggactgtctacttgtctcaccgactcgc
tttcggcctccagccaagatgggtgatacgctttttgagcaccctcataacgaactcctg
gccaaggtactcaatacgtcgtatagtcttcgagatcaagcagacgcactaagagctgca
aacgagaaagactcgactgtggacgaggtttcacgtcggcgtatgttaggcaggctcatc
gagagcttggtacagctgcaggtggatgtcaatagcttcatcgacagcagcaagaatccc
caaagaatgcgtcagggcaaattgcctcccgccggtgtcaaacagaaccttgagaagaaa
gaaggattattccggatgaacatgatggggaaacgtgtcaattattcggcaaggtctgtc
atatcgcctgatgtgaatatcgacacgaacgagattggtgtacctcctgtcttcgctcgc
aaactcactttcccagaaccggtcacagaacacaacgtgcatctgatgcgcgagctggtc
acaaatgggcatcacaagtatcctggcgcaagcattattgaacttgaagatggtaccaag
caatctctggaaaaaatgaatgtggaagaacgacgagcacttgcaaaccaattgcttact
ccacaaaacgatttgcatggttcgtcaaaaatgggattgacaaccaagacgcctgccgta
aataaaaaagtttaccggcatctccgggatggtgatgttctcattctcaaccgacaaccg
actctacataaacccagtatgatggtgcacaaggctagggtactccagggagagaaaact
attcggatgcactatgctaactgtaattcatataacgccgattttgacggtgatgaaatg
aacatccattttccgcagaacgaacttgctcgatctgaggctatgttcatcgccaacact
gataatcaatacctcgtgccgacgtcaggaaaacctctacgaggtttaatacaggatcat
gtcgtagcaggtgtctggatgactagtcgtgacacgttcttctctcgcgaggagtacttt
cagcttctatacggagctcttcgaccagaagaacagacagatggtcgccttcgcacccta
ccaccaacaatttggaagccagtaccattatggactgggaaacaaattatctcgacaatc
ttgcttaacattaccccatctgcagctcagggactgaacctcacgtcgaaagctaaagtc
tctggtgatctatgggggaaaggttctgaggaaggaagagtcgtagtcatggacggggag
ttactctgcggtattctggacaaatcgcaattcggtgccactgactatggtctcgtacat
tcctgttacgaactttatggcgcagacattgctggaaggctccttggcatcctgagtcgt
ctccttaccaagtttcttcagcatagggcattcacttgtcgaatggacgatcttacgctc
accgcacttggtgattctcagagacgtagcttgttacagaagggcaagaatcttggacag
gaaggcgctgaggaaaatttcccgtcattggctacgatgcctgtgtcggaaaagaagggt
gctttgcgagcattcctccgagacgtattgagggatgatgcaaagatggctggacttgac
gtcactgtcaagaaaaagcttgctggtcttacaaagtcaatcgcagatgcttgcatgcct
catggcttgagccgcaagttcccgcataaccacatgcaaatgatgacccagtctggtgcg
aaaggtagtgcagttaacgcacaacagatttcctgtgcactcggccagcaggagctagaa
ggtcgccgtgttcctgtaatgattagcgggaagacgctcccttctttcaaggcctttgag
actgctgctatcgctggtggatacgtcgcgagccgattcctgacgggtgtcaaacctcaa
gaattttacttccattgtatggctggtcgagaaggtctcatcgatacagctgtgaagact
tctcgatcaggctatcttcagcgatgcttaatcaagcacctggagggtatccgtgtgcat
tacgacaacaccgtgcgcgctagtgattcttcaattcttcagtttcattacggtggtgac
tgccttgatgtaacgcgacaaaaacatctaacccaattcgagttcgccgcgcggaacgag
cgatccctggtcgcgtcccttaggacgccctctgtcgatcattttgacgacaacgaaggc
gctatcaaacatatgaaggatgcgcttaaatacctgcggaaaccgaagaaaggaaagaaa
ttagatcctgcgatgtctgtttacaatccgagtaggaatatcggtgcaacgtcggagaag
tttgctcagaaagtcgaagagtatatcaagtcgaatccagaccatatgctcaaagacaaa
aacgccgaagccccgttgtggttgtcgaagagtcgcaaaggtatttcacataagatgttc
cgcatgctcatgaacgtcaagtacatgcgaagtatggtggatcctggtgaggcggtcgga
ctcctcgcatcgcaaggtgttggggaaccctcgacacaaatgacgctgaacacattccat
tttgctggccatggtgctgcgaacgttacccttggtatcccgcgacttcgagaaatcgtc
atgaccgcatcgaccaagccaaaaactccctcaatgacaatgcgcgtctgtgcaggtgcc
gacgataaactcataaaatccttctgcaaacgcgcaagccgacttgctttatcgcaaatt
gtggataaggtcgaagtcaacgagaagcttgctcgaacccgtcgaagacagttcagcgtc
gctatttcattttacccgaaggatgaatatcgagaagaatatgacctggaacctttagaa
atcttacctgcgttcggcgttgcattcccacagatattaagaagagagattcagttagaa
ctcaagaagctgaaagcggatttgagaacgcatttatcggaagttgggcgtgggcgaacc
gaaccacaggtaggagcgaaccccgagggagatgaggctaacgcgaacgccactgccgtg
aacgacgattcctcagaaataggtgacggcgacgcggatgctgaaaaacgtgcgcgccag
acaaagcaacaggccacatatgagtcggatgaagaagaggactctccttcaggagaattc
gatgacgccgcacttgaagcggaatttaacgagtctgcagatagccctgactctgatgac
gatgctatggatgttgatgacctaaccgaagtcgacgggcaaagcataaaggacaagatc
agtgaggtccggaatactttcttcctcaacttgaagtcagcgagctcgttcaagttctcg
gactctggtgtcagtttcgatctagagtttccatccgaccaaccgaaattgcttcttgtg
ggtcttgttgaaaaggcttgcaataagacgattgtacgtgagatcagtggtattgccgat
gtcttcttatccaaggacgaagggaaagacaagcaattcaagcttgtcactaatgggtca
aatttccaaggaatgtggcgcttcgcaaatgcgttcgaagaagagtccggagagcccgtc
gtggagctgaacgacatatatgccaacgacatatacgcagggttggtcgcgtacggcgtt
gagatggctcgtgcccttatcttgaaagagattcagaacgtcttcggtgcttacaatata
gatgtcgacattcgccatctcgagctcattgcagattatatgacattcgacggaggatac
aagcccttcaatcggaagggaatatccactaatccttcacctctcctaaaagcatcgtac
gagacgacggccgcattcatcagtgatgcgaccctgcacggtgactttgacgacctgagg
acgccttctgggaacatcgttcttggccgacccagtctcagtggcacgggagtcttcgac
attgttcactctttgcactag
DBGET
integrated database retrieval system
