Fomitiporia mediterranea: FOMMEDRAFT_142431
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Entry
FOMMEDRAFT_142431 CDS
T03132
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_142431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_142431
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_142431
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOMMEDRAFT_142431
Spliceosome [BR:
fme03041
]
Complex A
U2 snRNP components
U2 related factors
FOMMEDRAFT_142431
Complex B
FOMMEDRAFT_142431
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
FOMMEDRAFT_142431
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
90S particles
Helicases
FOMMEDRAFT_142431
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
CCCAP
nSTAND3
AAA_30
Flavi_DEAD
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
18672733
NCBI-ProteinID:
XP_007269397
JGI:
Fomme1_142431
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MSSLTNGVKENPYLAHLPPHQRRTGSSTPPTTKEPLYGFLPRKVKGEQVRRVLEGDVNPF
TKQPHSASYKKILEARKKLPVYTQMDDFYKMFTDNQVIVMVGETGSGKTTQIPQFVAYSD
LPHTKGKLIACTQPRRVAAMSVAKRVADEMDVQLGKHVGYSIRFEDMTEPGTTFLKYMTD
GMLLREAMNDPDLQRYSTVILDEAHERTLATDILMGLLKDLTKRRKDLKLIVMSATLDAV
KFQKYFGNVTSETSGPAPLFKVPGRTHPVEVFYTQEPEPDYVEAAIRTVLMIHRSEDPGD
ILLFLTGEEEIEDACRKIKLEADDLTNQDPESVGPLTCIPLYSSLPPQQQQRIFDPAPPP
RAEGGVPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA
QQRAGRAGRTRPGKCFRLYTEKDFMSELEEQTHPEILRSNLANTVLELVKLGIKDLVHFD
YVDAPAPETLMRALELLNYLAALDDEGGLTALGSIMAEFPLDPQMSKMLIVSPEFQCSNE
MLTIVAMLSVPNVFVRPPNARKEADAAKAILSHPDGDHLTLLNVYNAYKQNLSDKNWAWT
NYLSARALAQAENVRTQLERIMERFEIELVTTQDERKFYENIRRALVCGYFMQVAHKEGE
KGSYLTVKDNQVVALHPSCGLETQPEWVIFNEFALTTRPYLRTVTEIRPEWLLEYAPVYF
DLSNFPDGETKRALARTLNKRMGKAARVNDASDGRSKKKPKTK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgctcaccaatggcgtcaaagagaacccatatcttgctcaccttcctccacat
cagagacgtactggatcttcaactcctccgactacgaaagaaccgctgtatggattccta
cctcgaaaggtgaagggtgaacaggttcgacgggtgctggagggcgatgtgaacccattc
acgaagcagccgcattcggcttcctacaaaaagattttagaagcgcgaaagaagttaccc
gtatatactcaaatggacgacttttacaaaatgtttaccgataaccaggtgattgtcatg
gttggtgaaactgggagcggaaagacaacgcaaattccacagttcgtggcttactcagat
ctgccacatacaaagggcaaattgattgcttgcacacagcctcgacgagttgctgcaatg
tcagtcgccaagcgtgttgcggatgaaatggatgtgcaacttggaaagcacgtgggttac
tctattcgtttcgaagacatgacagaaccagggacgactttcctaaaatacatgaccgat
ggtatgcttctgcgtgaagcgatgaacgacccggaccttcagcgctactcgactgtaatt
cttgatgaggcacacgagcgtacattggccacggatatcctcatgggtcttctcaaggat
ctaacaaaacgacgaaaagatctaaaacttattgtcatgtctgccaccctcgacgccgtt
aaattccagaaatatttcggcaacgtcacatctgaaacgtctggcccagcaccgttgttc
aaagttcctggtcgtacacatcctgtcgaggtgttttatacgcaggagccagaacccgac
tacgtcgaagcggctatccgaaccgtattaatgatccatcgttccgaggatccaggagac
atattgctcttcctcacaggcgaggaagaaatagaagatgcttgccggaaaatcaagctg
gaggcagacgacttaacaaatcaggatcccgagtcggttggtccgttaacgtgtatccca
ctatactcgtctcttccgccgcaacaacagcaacgcatcttcgaccccgctcccccacca
cgagctgagggcggtgtacctgggcgcaaggtcgtcgtgtccacaaacattgccgagacg
tctctcactatagatggtatcgtatacgttgtcgacccaggcttttccaagcagaaggtg
tacaaccctcgcatccgtgtcgagtccttgctcgtttctcctatttcaaaagcttcggca
cagcaacgggctggtcgtgcgggacgaactcgacctggcaaatgtttccgattatatacg
gagaaagacttcatgtcggagcttgaggaacaaacacatccggagattctcagaagcaat
ctagcgaatacggttctagaattggtaaaattggggatcaaagaccttgttcactttgac
tacgttgatgcccctgcgccggagacgctcatgcgagctcttgagctcttgaactacttg
gccgctttggacgacgagggtggccttaccgcccttggatcgataatggcggagttcccg
ttagaccctcaaatgtccaagatgctaatcgtcagtcctgagttccagtgtagtaacgaa
atgttgactatagtggccatgctctccgttcccaatgtgtttgtaagaccacccaatgca
cggaaggaagcagatgctgcgaaggctattttgtcacatccagatggcgaccacctgacg
cttcttaacgtgtataatgcctacaagcaaaacctgagcgacaagaattgggcatggacg
aattatctttctgctagggcgcttgcccaggcagaaaacgttcgaacgcagctcgagcgt
attatggagcgctttgagattgagcttgttacgacacaggacgaacgcaagttctacgag
aatatacgaagggcgcttgtatgcgggtactttatgcaagtcgcacacaaggagggagag
aaggggagttacttaactgttaaggataatcaggtcgtcgcgttgcatccgtcatgcgga
ttagagactcaaccggagtgggtcatcttcaacgagtttgctctaacgacgcgtccatat
cttcgcacagtgaccgagatacgacccgaatggcttcttgaatatgcaccagtctacttc
gacttaagcaatttccctgatggcgagacaaaacgcgcactcgcacgtacactgaacaag
cggatgggtaaggctgcacgggtaaacgacgcgtcggatgggcgctcgaagaaaaagccg
aagacaaagtag
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integrated database retrieval system
