Fomitiporia mediterranea: FOMMEDRAFT_142858
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Entry
FOMMEDRAFT_142858 CDS
T03132
Name
(RefSeq) SWIRM-domain-containing protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
fme
Fomitiporia mediterranea
Pathway
fme03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
FOMMEDRAFT_142858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_142858
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_142858
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
FOMMEDRAFT_142858
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
FOMMEDRAFT_142858
PBAF complex
FOMMEDRAFT_142858
GBAF(ncBAF) complex
FOMMEDRAFT_142858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
18672796
NCBI-ProteinID:
XP_007270579
JGI:
Fomme1_142858
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MDSPKRAGSPSSAAQEIKRVKLTVPEQNQGVTPVDPENAPGKRSELEPLQSGDIANLPAE
PAPEAQPETSGSTKVKVQGEGDEDGGDVSMNEGGDEENESGEDNDDEDPAQLEATRLRLE
EQARKYLAAQTHEVIIPSYAAWFDMSKIHDVEKRALPEFFNSRNRSKTPSIYKDYRDFMI
NTYRLRPSEYLTFTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDPDTRPATLAPPFTGH
FRVVLDTPRGLQSLHPGTRPSAKEATQAVNGAPKLVASVAGQASLELRQNIYQTTAKSSR
EISSSEANALTNGTSQSAARGASFSCDTCGVDCTAVRYHSLKQTNFELCPPCYLDGRFPS
TMFSGDFVKLTASQSNAVDDGWTDQEILLLLEGVEMYDDDWSAIEEHVGTRTAQQCIRKF
LELPIEDPYLEAESEGTKGPLRYARLPFEQADNPVMSVVAFLAGVVGPGVAAEAAKTALH
ELTDGNKEKKEGEVETTKDATKENGEEEETDKEQKVEQSVEPDATSTSAKESGEGGDSMA
VDEPSNQPKPTTQTPGIPQSKVQRAAHLALQSSAKAAKALADAEASSVRTALTQLIKLTL
SRLELKMSQFEEMESVLEEERRALAAQRAALANERTNVRRTLETVRAELAKNGGMLPNGA
AVANALAQSAPQGTKMSPVDGGVSLEGDAGPSTEGNFQQLG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggactctccaaaacgcgcaggctcgccgtcgtcggccgcacaggaaataaagcgtgtc
aagctcaccgtcccagagcaaaaccaaggcgttactccagtcgacccagagaatgcgcct
ggcaagcgctcagaactcgagcctctgcagtctggtgacattgcaaacttgcccgctgag
ccagctccggaagcgcagccagagaccagtggcagtacgaaagtaaaagtccagggcgaa
ggtgatgaggatggtggcgacgtctcgatgaatgaaggcggggacgaggaaaacgaatcg
ggcgaggacaacgacgatgaggacccggcacagctcgaagcaacgcgtctccgtttagag
gagcaggctcgaaagtaccttgccgcacaaacacacgaagtcatcattccctcatatgca
gcatggttcgacatgtcgaagatccatgatgttgagaaacgggccctacccgagttcttc
aactcacgtaaccgttcgaaaacgccatctatatacaaagactaccgtgacttcatgatc
aacacgtacaggttacgaccatcggaatatctcacgttcactgcttgccgaagaaacctt
gctggagatgtttgcgccatcatgcgcgtccacgctttccttgagcagtggggcttgatc
aactaccaggtcgacccggacacgcgaccagcaacccttgctccaccatttaccgggcat
ttcagagttgtccttgacacaccgcgtggtttacaatcactgcatcccggaacacgtcct
tcagccaaggaagccacacaagccgtgaacggcgcaccaaagctagttgcgtctgtagca
ggtcaagcctccctggagctacgtcaaaacatctatcagacaaccgcaaaatcatcacgc
gaaatctcgtcttccgaagccaacgcgctcacaaacggcacctctcagtccgcggcgcgt
ggagctagtttctcttgcgacacatgtggcgtcgactgcactgctgtgcgatatcactcc
ctcaaacaaaccaactttgagctctgtcctccctgttatctcgatggacgcttcccatca
acaatgttcagcggtgacttcgtgaaactcaccgcatcgcaaagtaatgcagtagacgac
ggctggaccgaccaagagatacttctcttgcttgagggtgtcgagatgtatgatgacgac
tggtccgctatcgaagaacacgttgggacacgcactgcacaacaatgtatccgcaagttc
cttgaacttcctatagaagatccctacctggaagctgaaagcgaaggtaccaagggtcct
ctacgctatgctaggttgccgtttgagcaagcggacaaccccgttatgagcgtcgtcgcc
ttccttgctggggtcgttgggccgggtgtagccgctgaagcggctaagacagcgttacac
gaactcacggatgggaataaagagaagaaggaaggagaggtggagacgaccaaagacgca
acgaaagaaaatggcgaggaagaagaaaccgacaaggagcaaaaggtggaacaatcagtc
gaacctgatgcaacatccacaagcgccaaagaatccggagaaggcggagacagtatggca
gtcgacgaaccctccaaccagcccaaaccaacaactcaaacaccaggaatcccacaatcc
aaagtccaacgtgccgctcacctcgctctccaatcctccgcaaaggcagcaaaggcactt
gcagacgcagaagcctcctccgtccgtaccgccctcactcaactaatcaaactcacactc
agccgactcgagctcaagatgagtcaattcgaagagatggagtccgtacttgaagaggaa
cgacgtgcgcttgctgctcagagggctgcgctggcgaatgagaggacgaatgtgaggcgg
acgttggagactgtacgtgcggaactcgcgaagaatggagggatgttgccgaatggcgct
gctgttgcgaacgctttggcgcagagtgcgccgcaggggacgaagatgtcgcctgtggat
ggtggggtgtcgttagaaggagatgctgggccttcgacagagggtaacttccagcagctc
ggttga
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