KEGG   Fomitiporia mediterranea: FOMMEDRAFT_142880
Entry
FOMMEDRAFT_142880 CDS       T03132                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
fme  Fomitiporia mediterranea
Pathway
fme03018  RNA degradation
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_142880
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOMMEDRAFT_142880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_142880
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_142880
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     FOMMEDRAFT_142880
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     FOMMEDRAFT_142880
Spliceosome [BR:fme03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    FOMMEDRAFT_142880
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18672799
NCBI-ProteinID: XP_007270604
JGI: Fomme1_142880
LinkDB
Position
Unknown
AA seq 95 aa
MSSLAGYVDRRVLLVLQDGRTIVGVLAGFDQRSDIVLSDCVERIYSMEEGVEEVPLGLYL
VKGDQILLIGELDEALDKAVDLSTVRAEPIAPIRY
NT seq 288 nt   +upstreamnt  +downstreamnt
atgtccagtctcgcaggctacgttgatcgtcgtgttctcctcgtccttcaagacggtcga
accatagtcggcgttctggcaggttttgaccaacgttcggatatcgtcctttcggactgc
gtggaacgaatatatagcatggaggaaggtgttgaagaagtacctctcggactatatctc
gtgaaaggagaccagatcctactaataggagagcttgacgaagcactagacaaagctgtt
gatctaagtacagtccgagcagagccaatcgctccaattcgctattga

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