KEGG   Fomitiporia mediterranea: FOMMEDRAFT_142893
Entry
FOMMEDRAFT_142893 CDS       T03132                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
fme  Fomitiporia mediterranea
Pathway
fme03013  Nucleocytoplasmic transport
fme03015  mRNA surveillance pathway
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_142893
  09122 Translation
   03013 Nucleocytoplasmic transport
    FOMMEDRAFT_142893
   03015 mRNA surveillance pathway
    FOMMEDRAFT_142893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_142893
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_142893
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     FOMMEDRAFT_142893
    TREX complex
     FOMMEDRAFT_142893
Spliceosome [BR:fme03041]
 Complex C
  Other components
   EJC/TREX
    FOMMEDRAFT_142893
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    FOMMEDRAFT_142893
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 18672800
NCBI-ProteinID: XP_007270627
JGI: Fomme1_142893
LinkDB
Position
Unknown
AA seq 268 aa
MSLPRATPRAKHYHGGAKGKVTGNTVQPAPAWRVRNIPPESQSQNAIDLGSKILLSNLPL
DVSEDEIVDLMKKTIGPVVLRDSFLICNSKGVPRGAAIVTFTRGIDASRARARYNGKVID
GKRAIKLEIILDRDVDSSRPSQQQPPTAPNGVQQQKPKTLFDRLGPLPSSPSHQPTKANG
VANSRRTPSLLDRAAAAPFLSTPPSKPRSFSTPIQPRVVPPSAPAALNKKRQKKGPKRVR
KSVADLDREMEEYAVGRRNFNSDGVMMI
NT seq 807 nt   +upstreamnt  +downstreamnt
atgtctctaccacgagcaacaccacgcgcaaaacactatcacggcggcgcgaagggcaaa
gtaaccggaaacacggtccaaccagctccagcatggcgtgtacgaaacattccccccgag
tctcagagtcagaatgccatagatctggggagtaagatattgttgagtaacttaccgctt
gatgtatcggaggatgagatcgttgacttgatgaaaaagacgattgggcctgttgtctta
cgagactcgtttttaatttgcaactcgaagggtgttccgcgaggcgcagctatcgtcacg
tttacgcgcggaattgacgcgtcgagggcgcgagcgaggtataatgggaaagttattgac
ggcaaacgcgcaatcaaactcgaaataatcttagaccgagacgtcgactcctcacgtcca
tcccaacaacagccacccaccgcaccgaatggtgtacaacaacaaaagcccaaaacatta
tttgatcgtctcgggcctctaccttcctctccttctcatcaaccaacaaaagcaaatggc
gtagcaaatagtcgacgaacaccatcactactcgaccgcgcagcagcagccccattcctc
tccacacctccatccaaacccagatccttctcaacacccatacaaccacgcgttgtacca
ccatcagcaccagcagcccttaacaaaaagcgacaaaagaaaggacccaaacgcgttagg
aagagcgttgcagaccttgatcgcgagatggaggaatacgctgttgggcggaggaacttc
aatagtgatggtgtgatgatgatatag

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