Fomitiporia mediterranea: FOMMEDRAFT_145449
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Entry
FOMMEDRAFT_145449 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_145449
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
FOMMEDRAFT_145449
microRNA pathway
RISC loading complex
FOMMEDRAFT_145449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
18673102
NCBI-ProteinID:
XP_007264338
JGI:
Fomme1_145449
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MSSVEEALSLVPRAYQEEIFEQAQNGNVIAALDTGSGKTFIAALLIKWVMSQPSQAGKKT
VFLVPKVPLVDQQRDVLSKQTPLIVRGYVGAMGVDAWDKGRWELEFLQSDCLVMTAQIFK
NILVHGYWSLDQVALLIFDECHHARKYHPYNAIMVDHYRSSEWKPKIFGMTASPIWNREK
PLESIETLQNNLCSKVIAVRQHMDLLDQHVNRPIELIVRYQNPSDEHYDTYYKPSLWDYL
HSDEQVISPILAIRDAEVRYKVTLNAVGPAGADYFLLKHAIHAVEEYELRAMMPEISSRS
RKKASFTSDTISDSGRNDDNELAIGLEKLRSAVLSFRRRLLSDGRTLPPEWLSPKLRAAV
DILVKHRSESFQGIIFVNQRQVAKALSWILGRVLETKTWLRCGELIGHGESSKSSSSGKG
MDIKRQRDIVQSFRSGNLNLLIATDVGEEGLDFPACALVIRYDSVKHMVGYVQSRGRARQ
QNSTYVVMAAENDAQEIARYKGLRNAEPELRIVYQTMNAGGSSGELDNGDELDNDYVDPL
DLASRETYTIPSTGATLTYSSAISLLSHFCSLIPGDSYTRSLQPKYIIESADKTEFTATL
HLPRALPLTSDQLLYNGPPKRSKKEAKRAVAFIAMRMLHTLGIFDDYLSPIKSRKGMSIE
DADGRPIAKVNAVGVMMDVLVASPWSTGPPWHLHVLRINDKFHAGLVCGRSLPEVDLVTR
GKYVQVHSQASVLPFDLTLVQLDLLEKFTRMGIWWRVTGSPVTSPVACFLVPLDQQGNID
WSAIERAVTNEIGTYDWSDVKDNDEGKVMLMNSRRVGRVLRFIRFRPDLSVDTKPSPTTI
EGSFDTYAAYFEAKYSFKYKKTEHVRIVATASGRIVEVSEMPRYPSSGYNFRVSRPQQDA
YDTQQSMATFLLPESYCRRALFHMDIVEAFQVFASACQRVCDVFRARVARNFLKYPPIPD
NLIVEALTLPSAMAGFNNQRLETMGDSVLKLSVVVYIFNAFPNRHEGQLTALKENSVSNR
LLLARAKEVHLERFLTSENRSMRTWRFERSSVTSLGTCKIGSEEIALAHRTFPRRSLQDC
MEASLGAAYVAGGLNFALQTGTALGLCFGGPTPWPERYPLTEFVPPAALFGKLQEDLQYT
FRNGKLLVEAVKHPSFDFLENYPCYQRLEFLGDAVIELVVTTYLYNKFPGANSGQMSWAR
ARAICNTTLAALAVNRLSLHKYLLANCVELSEDVAKEVEILSAASYEDVSLNDWRYDPPK
VLGDIFESVIGAVFVDSGFDYTITAPIIEELMKDVLVLLHPDIPYDPVSRLLQWVAKSGC
MRAKFQRTQTNPRVNRKDGVVVLIHDRIVAGPITAANKPLAKGLVAEKAMQVLADGSSEF
ALRKICECMRVEDEEEPRDLPERNTREKDLDLETTEGFLRAGSVRLSEVEADELAKEVEE
MNDDSESWELEEVELLLDTSSGPASEVDGMDCS
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgtcgaagaagcacttagtctcgttcctcgcgcttaccaggaagagatcttt
gaacaagcgcagaatggcaatgtcattgcagcactagacacgggcagtggcaagaccttc
atcgcagcacttctcatcaaatgggtcatgtcgcagccatctcaagccggaaagaagaca
gttttcttggttccaaaggtcccgctcgtggatcagcaacgcgacgtcctgtctaagcaa
actccactcattgtccgaggctatgtcggtgcgatgggtgttgatgcctgggacaagggc
cgatgggagctggagttcttgcaatcagattgcctcgttatgacagcccagattttcaaa
aacatccttgtacacggatactggagtctcgatcaggttgctcttttgatttttgatgaa
tgccatcacgctcggaaataccacccatataatgcaataatggtggaccactatcgctca
agtgaatggaagcccaagattttcggaatgacggcctcgccaatttggaatcgggaaaag
cctttagaatcaatagagactctgcagaataatttatgttcaaaagtaatcgctgtacgc
caacacatggatctgctcgaccagcatgtcaatagacctatagaactcattgtgaggtat
caaaacccaagcgatgaacattatgatacttattacaagccgtcactctgggactatctt
cattcagacgagcaagttattagcccgatattggcgatcagggatgcggaagttcgctac
aaggtcacgcttaacgcagttggaccagcaggggcggattattttctattgaaacatgca
atacacgctgtggaggagtacgagttacgcgcaatgatgcccgaaatatcttcgcggtct
aggaagaaagcatcatttacatccgacacgatttcagactccgggagaaatgatgacaac
gaacttgctattgggcttgagaagctacgctctgctgtgttatcgtttcgcaggcgttta
ctatcagatggtcgaactttaccacctgaatggctttcgccaaaactccgagcagctgtt
gatattctagttaaacaccgttcagaatcatttcaaggtatcatcttcgtcaaccaaagg
caggtcgcgaaggcgctgtcatggatcctcggccgcgtattggagacgaaaacctggctt
cgttgtggagaattgatcggacatggagagagctcgaagagtagttcatcaggcaaaggg
atggatataaagaggcaacgggatattgtgcaatcgttcaggtctggaaacctcaatctc
ttgatcgctactgacgtcggagaggaaggcctcgattttcccgcttgtgcacttgtcatc
cgctatgactcagtcaagcacatggttggctatgtccagtctcgaggtcgcgcacgccag
caaaattcgacttacgtggtaatggctgcggagaacgatgcacaggagattgctcgttac
aaggggttgcgcaacgccgaacccgaactgaggattgtatatcagacgatgaatgctggt
ggatcatcgggcgaactggacaatggtgacgagctggataatgattacgtcgatcctttg
gaccttgcctctcgcgaaacctatacaataccttcaactggtgccactctgacctatagc
tctgccatctcgttactcagccacttctgctcgctaatacctggagattcgtacacgcga
tctctgcagccaaagtatattatagagtctgcagacaagacagagttcacggcaaccttg
caccttccccgagcgctgcctctaactagcgaccagcttctgtacaatggtccgccgaaa
cggtcgaagaaagaagctaaacgtgctgtcgccttcatagcaatgcgcatgctacatacc
ttgggaatttttgacgattatctttcgccgatcaaatcccggaagggcatgagcatcgag
gatgcagatgggcggcccattgcgaaggttaatgctgtgggcgtcatgatggatgtactt
gttgcgagtccgtggagcactggtccaccatggcatttgcatgttctccgtatcaacgat
aaattccacgctggcttggtttgcggaagatctctccctgaagttgacctggtgacacgg
ggaaaatacgttcaggtccactcccaagcgtcggtattacctttcgacctaactttggtc
cagctggatctgctagaaaaattcacgaggatgggaatatggtggcgtgttacgggcagc
ccagtcacttctcctgttgcttgcttcctagttccacttgaccaacaggggaatattgat
tggtccgcgatagagagggcggtaaccaacgagatcggaacctacgattggagtgacgtt
aaggacaatgatgaaggcaaggtcatgctcatgaattctaggagagtcggtcgagtcctc
cgtttcatacgatttcgacctgatttatctgtggatacaaagccttctcctacaactatc
gagggatcattcgacacatatgcagcgtacttcgaggcaaaatactcattcaagtacaag
aagacagagcatgtccgcatcgtagcaacggcatcaggacgtattgttgaagtatcggaa
atgccgcgttatccttcatcaggttacaacttccgcgtttccagaccgcaacaagacgcg
tatgatacgcaacagtcaatggcaacgttccttctcccagaatcgtactgtagacgagct
cttttccatatggatattgtcgaagcctttcaggtgttcgcatctgcttgccagcgtgtt
tgcgatgttttccgtgcaagggtggctcggaattttctcaagtatcctccgattccagat
aacttgattgtcgaggctctaactcttccttccgcgatggctggatttaacaatcagcgg
ctggaaactatgggtgacagcgtcctcaagctgtcagtcgtcgtatacatattcaatgca
ttcccgaacagacatgaaggccaattgaccgctctgaaggagaacagcgtttccaaccgc
cttctcttagcccgcgcgaaagaagtacacctagagcgcttcttgactagcgagaaccgg
agcatgcgaacttggcggttcgagcgatcatctgttacaagtctcggaacctgcaagata
ggctcggaagaaatagctctcgctcacagaacctttcctcgtcgaagtctacaggattgt
atggaggcttcactcggcgcggcatacgtagcaggtggacttaacttcgcccttcaaaca
ggcactgcattaggtctttgctttggtggccccactccatggccagagcgatatccgtta
actgaatttgtgcctccggcagcccttttcggaaagctacaggaagatttacagtatacc
tttcgcaatggaaaactcttagttgaggcagtcaagcatccatcattcgactttctggag
aactatccatgttaccaacggctagaatttctaggtgatgctgtcattgaacttgtcgta
acgacatacctctataacaagtttcctggggccaactcaggtcaaatgtcatgggcacgt
gcccgagccatttgcaataccacactagctgcacttgcagtgaatcggctttcattgcat
aaatatctgctagctaactgtgtggaattgtcagaggacgtggcaaaggaagttgagata
ctctccgccgcttcatacgaggatgtatccttgaacgattggagatatgacccaccgaaa
gttctgggagatatatttgagagcgttattggcgcagtgtttgtggacagtggatttgat
tacacgattacggcgccgattatcgaggagttgatgaaggatgtcttggtgttacttcat
cctgacattccttacgatcccgtctcaagactgttgcaatgggtcgcaaagtcgggttgc
atgagggcgaaattccagaggacccaaaccaacccacgcgtgaaccggaaagacggcgta
gtcgtgctgatacatgatcgcatcgtagctggacccatcaccgcagcaaacaagccgctc
gcgaaaggcctcgtagcagaaaaggcaatgcaagtcctggccgatggatcttccgaattc
gcattacgcaagatctgtgagtgtatgcgtgtagaagacgaagaagagcctcgcgatctg
cctgagagaaacactagagagaaagatcttgatcttgaaaccaccgagggattcttgagg
gctggtagtgtacgtctctcggaggttgaagcggatgaactggcaaaggaggtagaagaa
atgaacgacgactcagagtcgtgggagcttgaagaagtggagttgcttttggacacgtcg
tctggacccgcaagtgaagtagatggcatggattgttcgtaa
DBGET
integrated database retrieval system
