Fomitiporia mediterranea: FOMMEDRAFT_147876
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Entry
FOMMEDRAFT_147876 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K12597
protein AIR1/2
Organism
fme
Fomitiporia mediterranea
Pathway
fme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOMMEDRAFT_147876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_147876
03016 Transfer RNA biogenesis [BR:
fme03016
]
FOMMEDRAFT_147876
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
FOMMEDRAFT_147876
Transfer RNA biogenesis [BR:
fme03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
FOMMEDRAFT_147876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
18673339
NCBI-ProteinID:
XP_007268593
JGI:
Fomme1_147876
LinkDB
All DBs
Position
Unknown
AA seq
591 aa
AA seq
DB search
MDKTDVEVIDLTGSTPKSPTLPTTRTGVRSLRKQKRPHTDLNLTQGAANETIIILDGDEE
PSSVPSSGPEKKRRTRKKRKKPLLPENEIADDAEDGEIVQLPREGQTTSSSSLFYLDDKP
DTLPEASHEHGATSNSMALEVAETEALLLLDHVTLSVAQNNSVALKMKEAAMIDSDTDDF
IHFADAELNLFTRYYEEQKDDHVRKAHLVCGQCGAEGDHRQADCPVVVCLTCGAHNEHST
RQCPIVKTCFSCGMKGHINKDCPNKFMSRQMTDRYYDCSRCGSILHKTRECPTLWRMYDY
MDDTDRDVTLKMRREKENLPVGQGGEGYIGEDYWCYNCGASGHLGDDCHVEPLNPDAKEP
SAFGSYNTMSGPFADKEFAPSDRRKLRREWELKGNFDDGYGFAGPSDVGKRGRDKERNRM
RRREKETQEVDDVYDGDDWFGSRQRSETRQRLSQNAKRGEPTGKIVLKLGSASGSYKDEQ
RPADRLLDRISDHAKRDSRVARIEDRRSASPSSDHTSRRRRQDDALRRERGQKGDRERGD
RNRARDKGRDEGRHRERYIQNSEGNAFRQRVESKKRDQDKSGRQYYGGYAR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaactgacgtcgaggtgattgaccttactggttctacacctaaatctccaaca
ctcccaacaaccagaacaggcgtcagatctttacggaagcagaaacgaccacacacagac
ctgaacctgactcaaggagctgcaaacgaaacgataatcattctagatggagacgaagaa
ccatcgtcggtgccatcttccggacccgagaaaaagcgaagaaccaggaaaaagaggaag
aaaccgttgctgccagagaacgaaatcgcagacgatgctgaagacggagaaatagtgcaa
ttgccacgagaggggcagaccacctcatcctcttctctgttctatctcgatgacaaaccg
gatacactgccagaagcatcacacgagcatggagctacttccaattctatggctctggaa
gtagctgaaacggaagctcttctgcttcttgatcatgttactctcagcgttgctcagaat
aacagcgttgcgttgaaaatgaaagaagcggctatgattgactcggacaccgatgacttc
attcacttcgctgacgccgagctaaatctgtttacaaggtactacgaagaacagaaagat
gatcatgtcaggaaagcacacttagtttgtggtcaatgtggtgcagaaggggatcataga
caagcagactgtccagttgtagtctgccttacatgcggagcacacaatgaacactcgact
cggcagtgtcctattgtcaaaacgtgcttttcatgcggcatgaaaggccatataaacaaa
gactgtccgaataagtttatgtctcgccagatgacggatagatactatgattgcagccgg
tgtggctcgattctgcataaaacaagggaatgtccaacgttgtggagaatgtatgactac
atggacgatacagatcgcgatgtgacgctaaagatgagaagagaaaaggagaatctcccg
gttggacaaggcggcgagggctacatcggcgaagattattggtgctataattgtggagcc
tcaggtcatcttggcgacgactgtcacgtagaaccgcttaatcctgatgcaaaagaaccc
tctgcatttggctcgtacaacacaatgtctggacctttcgcggataaagaatttgcgccg
tcagaccggcgtaaactccgacgagaatgggaattgaagggtaatttcgatgacggatat
ggttttgctggcccaagcgacgtcgggaaacgtggacgtgataaagaaaggaaccggatg
cgccgtcgggaaaaggagacccaggaagtcgacgatgtctacgatggcgacgactggttc
ggtagtcgacaacgttccgagactcgacagcgactctcgcagaatgcgaaacgcggagaa
cctactgggaaaattgttttaaagctcggcagtgcaagcggttcctacaaggacgagcaa
aggcctgctgatagactcctagaccgcatttccgaccatgcgaaaagggatagtagagtg
gctcggatagaagaccgaaggtctgcatccccaagcagtgaccatacctccaggcggcgg
cgacaggatgatgcgttaagacgcgagcgtggtcagaaaggtgatcgggaacgaggagat
agaaatagagctagagacaaagggagggatgaaggcagacacagggagagatacattcag
aactctgaaggaaacgcatttcgacaacgagtggagagcaagaaacgtgaccaagataaa
tcaggtcgtcaatactacggcggctatgctcgatga
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