KEGG   Fomitiporia mediterranea: FOMMEDRAFT_147879
Entry
FOMMEDRAFT_147879 CDS       T03132                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K12880  THO complex subunit 3
Organism
fme  Fomitiporia mediterranea
Pathway
fme03013  Nucleocytoplasmic transport
fme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    FOMMEDRAFT_147879
  09122 Translation
   03013 Nucleocytoplasmic transport
    FOMMEDRAFT_147879
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fme03019]
    FOMMEDRAFT_147879
   03041 Spliceosome [BR:fme03041]
    FOMMEDRAFT_147879
Messenger RNA biogenesis [BR:fme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     FOMMEDRAFT_147879
Spliceosome [BR:fme03041]
 Complex C
  Other components
   EJC/TREX
    FOMMEDRAFT_147879
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    FOMMEDRAFT_147879
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st ANAPC4_WD40 Beta-prop_Aladin WD40_Gbeta WDR55 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 CFAP251_N Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st EIF3I Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 PD40 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 18673340
NCBI-ProteinID: XP_007268596
JGI: Fomme1_147879
LinkDB
Position
Unknown
AA seq 358 aa
MANRASKGNKPEDVDEFVEPARYPSPPPHITHISRGVHTPSFSSFQPRDLRFTSIHPVTH
VAWSCDGRRLASVGIDKAVRIWTPEKSLESRSAVQYVGGHDYDVDYVTWNPTHPELFCTS
SQRDRKIVFWDARQSRPVQVITPSSSYAPSQINYAPDGKTICFVLTNNQLSFMTHGHAAG
EAKPQWSVIKSEPLSASTALFNHAGNGLVLSHFRQNTVMIVDYPSLQIREQPAAHVGGCL
AVALDPRGRYLASGGNDSIIDIFDMTEWICVNTITCCDHSITSLSFSHDGEYLAVASQGS
YIDVCAVETGLPLHRIQSIGPASAVTWHPSKHVLAYCGQQVREGAPQIAYLSLFGPGV
NT seq 1077 nt   +upstreamnt  +downstreamnt
atggccaacagagcgtccaaaggcaacaagcctgaagatgtcgacgagttcgtagagcct
gctcggtatccttctccaccgcctcacataacgcatatttcacgcggtgtccatactcct
tcgttctcttcatttcaaccacgagatctccgattcacgtcgattcatcctgtaacacat
gtcgcttggagctgtgatggacgcagattagcgtctgttgggattgacaaagccgtgagg
atatggactcccgagaagagtcttgaatcccgtagtgccgtccaatatgtcggaggacac
gactacgacgttgactatgtgacatggaatccgactcatccagagctcttctgtacttca
agccaaagagatcgcaagatcgtcttctgggatgcccggcaaagccgaccagttcaagtt
atcactccgagtagcagttacgccccgtcgcagattaactatgcacccgatgggaagacc
atttgtttcgtcttgacaaacaaccaattgagtttcatgacccacggacatgccgcaggc
gaggcaaaacctcaatggagtgtcatcaaaagtgaacctctcagcgcttcaacagcttta
ttcaatcacgcagggaacggattggttctaagccatttccgtcagaacacggtgatgatt
gtggattatccgtccctacaaattcgtgaacaacccgctgcacatgttggaggttgtttg
gctgtcgcattggatcctcgcggaagatatctcgcgtcaggtggaaacgactctataatc
gacattttcgacatgactgaatggatctgcgtgaacaccattacatgctgcgaccactca
atcacgtcactaagtttctcgcatgatggggaataccttgcagtagcgagtcaaggctcg
tatattgacgtgtgtgctgtggaaactggcttacccctacatcgcatacaatccattggt
cctgcttctgcagttacatggcacccctcaaaacacgtgttggcgtattgtggacagcag
gtccgagagggtgctccgcagatagcgtatttgagtttattcggacctggcgtgtaa

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