Fomitiporia mediterranea: FOMMEDRAFT_151374
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Entry
FOMMEDRAFT_151374 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K14315
nucleoporin NDC1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_151374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_151374
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
FOMMEDRAFT_151374
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
DUF2505
Motif
Other DBs
NCBI-GeneID:
18673851
NCBI-ProteinID:
XP_007262463
JGI:
Fomme1_151374
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MLNSSTRQAQSAPITAISSTLSTRSSPSVPPASQVFEPLVKSILARRFAYYVLSTSAAAA
WLLATIWSTWQYGGYNSLGVLGCVVNLLSPLTLFCAVLWWTFASVPIAVLRKIHLRATRT
SALSPRQTLTQHSKERQYQHALLVTFISSAFLTVCHAFVAQTVERSGRSDPGLGVWAGSK
KHPYHINGRLCFLFLSQFSCVVLYCLRDVLKSRFDIHWTGQSDFTMHAFASILSSLVSTL
MLSTTSTVASLAGFGVLRSFVLPVVYRLPILHGFLRPFVAHFLRPTYTMTFFWTDFDLII
RAFFLALSSQVLWDVPSTMFDVVFSLPISTLDSRKDAGLVLVSGTGSSDAYFQLHAYHGL
YQLSSDTDQSAAGRSVIYSDVKHSPNLWSTLVRRSLVLLGSDYQLFLRRGNPAPPPQVVV
PPAVKPTTAQKPVTPIIRAQVYKKAPGTPIDRIIEALSSDDATSGPSTNAPSSGPAEIHD
FTTKLRSLTHPIDAALTDVSKSITNIVPSMRSSIHPSHLHIKEVSTWWTRERRNKAAQKA
LPNKELDAVIVNTLSRLVAHSLKEDTLGSVQRDIPRILEAMVLFHTAIENYRVELSSAVS
ALETSNALRETELTILKEETDLATEWVEDLSSELRTGISLILKTFGDRLAKFRFPPTIAT
RLQSFADYST
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgctcaactcctcgacgcgtcaggcgcagtctgcaccaatcactgcaatatcctctact
ctttcaacgcgttccagtccatccgtacctccggcgtcgcaggtattcgaacctctcgtc
aagtcaatccttgctcgcagattcgcgtactatgttctctcaacttctgcagcagcagcc
tggctactcgccaccatttggtccacctggcagtatggcggatataactccttgggtgta
cttggttgtgtcgtgaacttgctttcaccccttaccctgttctgtgctgttctctggtgg
acgttcgcgtcggtcccgatagctgtcttgcgcaaaatccatctcagagcaacgcgcacc
tctgcattgtctcctcgccagaccctcactcagcatagcaaagagcgtcaatatcagcac
gcattgctagtcactttcatttcctctgcattcctcacagtatgccacgcattcgtagct
cagacagttgaaagaagtgggcgaagtgatcctggactcggagtttgggctggatcgaaa
aaacatccatatcacattaatggccgcctttgtttcctatttctatcccagttttcttgc
gttgtgctctactgtcttcgcgatgtactcaaaagccgatttgatattcactggacaggc
caatcggatttcacgatgcacgcgtttgcttcgattctttcctctttggtctctacctta
atgctctcgacgacttccaccgttgcttcgttggcagggttcggcgtcttgcgctctttt
gtgctgcccgtcgtgtatcgtttacccatcctccatggttttcttcgtccatttgttgca
catttcctccgcccaacatacactatgacattcttctggactgacttcgacctgataatc
cgtgcctttttccttgctttgtcaagtcaggtactttgggacgtcccatcaacgatgttt
gacgtggtcttctcgcttccgatttcaacgcttgattcgcgcaaagacgccggactcgtc
ctagtctctgggactggttcttcagatgcatactttcagttacatgcataccacggactt
taccagctttcatccgacacggaccagtcagctgctggacgttccgtaatctacagcgac
gtaaaacacagcccgaacttatggtctacgttagttcggcgtagcctcgtattactaggc
tctgactatcaactctttcttcgtcggggcaaccccgcgcctcctccacaagtcgtggta
cctcctgcagtaaaacctacaactgcgcagaaaccagtaactcctatcatccgcgcccag
gtgtataagaaagcgcctggaactccgatcgatcgaattatcgaggctctctcctctgac
gacgcaacttccggaccttcaaccaatgcaccatcaagtggtcctgcggaaatccatgat
ttcacaacaaagttacgatctttgacgcacccaatcgatgccgctcttacagatgtttcg
aaatccataacgaatatcgtaccctcaatgcggagctcaatccatccgtctcacttacat
ataaaagaagttagcacctggtggactcgagaacggaggaacaaagctgcacaaaaggct
ttacccaacaaagagttggacgcggtgatcgtcaacaccctgagtcggttagtagcccac
tcgcttaaggaggacacactcgggagtgtccaacgagacatacctcgaattctcgaagct
atggtgttattccatactgcgatagagaactaccgagtagagttgtcgagcgcggtaagt
gctctagaaacgagcaatgcgcttcgtgaaaccgagttaacaatcctgaaagaagagacc
gatctcgcaaccgagtgggttgaagacttgtcatccgaactgcgaactggcatatctcta
atactcaaaacgtttggagaccgacttgcgaagttcaggtttccaccgactattgctacc
aggttacagagctttgcggattatagtacttag
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