Fomitiporia mediterranea: FOMMEDRAFT_153423
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Entry
FOMMEDRAFT_153423 CDS
T03132
Name
(RefSeq) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03022
Basal transcription factors
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOMMEDRAFT_153423
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_153423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_153423
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_153423
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_153423
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FOMMEDRAFT_153423
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOMMEDRAFT_153423
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
FOMMEDRAFT_153423
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOMMEDRAFT_153423
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18674149
NCBI-ProteinID:
XP_007264210
JGI:
Fomme1_153423
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MKFLIDDLPIIFPYDRIYPEQYQYMCDLKRTLDASGHCVLEMPSGTGKTVSLLSLIVSYQ
QFYPTKRKLIYCSRTVPEIEKALAELKRLMEYRIQHAETEEERQKERAFTGVGLTSRKNL
CLHPEVSKERKGVVVDARCRDLTSAFTMERARNNPGSVPTCSFHDELEAFEPGNLIPPGI
HTLADVLQYGRDKGVCPYFTVRRMMAFVDVIIYSFHYLLDPKVAEQVSKDISKDAIVVFD
EAHNIDNVCLESLSIDLTRPMLDSAARSVTRLGDKIEEIKITDASRLQDEYAKLVEGLQE
ADEARQEDAIMANPVLPDDLLKEAVPGNIRKAEHFVAFLKRFVEYLKTRMRVLHVVAETP
LSFLQHLKDITFIERRPLRFCAERLQSLVRTLELTNLDEYASLQKVANFATLVATYEKGF
LLILEPFETDNATVPNPIFHFTCLDPSLAIAPVFERFSSVVITSGTISPLDMYPKMLQFT
PVVQETYAMTLTRNSFLPLVITRGSDQVAISSRFEVRNDPAVVRNFGAILVEYSKIVPDG
IAAFFPSYLYMESIVAAWNDMGILNEVWKHKLIFVETPDANETSIALENYRRACNNGRGA
VLLSVARGKVSEGIDFDHNYGRAVIIVPYQYTESRILKARLEYLRDAYRIRESEFLGFDA
MRNAAQCVGRVLRGKTDWGLMVFADKRFARADKRAKLPRWINQYITETAANLSTDMALVL
SKLFMRQISQTHAEDQTGISLWTLADIEKAQAKQRALELEQEKAGGLDERNAIPAPMEVD
DEYGTGGLDDQTLGEVDIDV
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcctcattgacgaccttccgataattttcccttatgaccgaatatatccagag
caataccagtacatgtgcgatctcaagcgcacgctggacgcttccgggcactgcgttctt
gagatgccgtcgggtacgggaaagacggtatcacttttgtcgttgattgtgtcttaccag
cagttctacccgacaaaacggaagttaatctactgttcccgtacggttccggagattgag
aaggctttggcggagctgaaacgccttatggagtatcgaatacagcatgcagaaacagaa
gaggaaaggcaaaaagagcgggcattcaccggtgtgggacttacaagtcggaaaaaccta
tgccttcatcccgaggtatccaaggaaaggaagggtgtggtggtggatgcccgatgcagg
gacttaacgtctgcattcacgatggagagagcacggaacaacccaggatccgtaccaacc
tgttcttttcacgacgaactggaggcgtttgaaccaggaaatttaattccaccaggaatt
cacacgcttgcggatgttctgcagtacggtcgcgacaagggagtttgcccttattttacc
gttcgaagaatgatggccttcgtcgacgtcataatctattctttccactatcttcttgat
cccaaagtcgcggaacaggtatccaaggacatatccaaagacgctatcgtagtatttgat
gaagcccataatattgataacgtctgccttgaatccttgagcattgacctaactcgaccc
atgcttgattctgccgctagaagcgtaacgaggctcggcgacaagatagaagaaatcaag
attaccgatgcctcgcggttgcaagacgaatatgcgaagctcgtggaaggtttgcaagaa
gcagacgaagcacgacaggaagatgccatcatggcaaacccagttttgcctgatgacctg
ctgaaagaagccgttcccgggaacatcaggaaggcggagcatttcgtcgcgtttttgaaa
cgcttcgttgaatatttgaagacccgcatgcgtgtactccacgttgttgcggagactccg
ttgtccttccttcaacatttgaaagacattactttcattgaacgacgacctttacgattc
tgcgcagagcgtcttcaatccctcgtacgcacgttggagctgactaatcttgatgaatat
gcttctctacagaaggtcgcgaacttcgccactttagtagccacttacgaaaaaggtttt
ttgcttattttggagccgtttgagacggacaatgcaactgttcccaatcctatatttcat
tttacctgtttggatccatctttagccatcgctccggtatttgagcgatttagtagtgtt
gtcatcacttctgggacgatctcgcctctcgacatgtatccaaaaatgctacaatttact
cctgtagtccaggagacatatgcgatgactctaacccgtaactcgttcctacctcttgtt
ataacacgcggcagcgaccaagtagctataagttctcgtttcgaggtgcggaacgatccc
gccgttgtccggaactttggagccattcttgtggaatacagtaaaatagtcccagatggc
atcgccgcctttttcccgagctatttgtacatggaatcgatagttgccgcgtggaatgac
atggggattttgaacgaagtgtggaagcacaagctcatctttgtggaaacgccagatgca
aatgagacgagcatagctctagaaaattatagaagagcatgtaacaacggccggggagcc
gtgctgctttctgtggcccgtggaaaggtttcggaaggcatcgatttcgaccacaactac
ggtcgagctgtcattattgtcccctaccaatacaccgagagccggatactgaaggctcgg
ctggagtatctgcgtgacgcgtaccggatacgggaatcagagttcctcggtttcgatgcc
atgcggaatgctgcgcagtgtgtcggccgtgttctgcgagggaaaaccgactggggattg
atggtgtttgctgataagcgttttgctcgagcggataaacgtgcaaaacttccgcgttgg
attaatcagtacatcactgagacggccgctaatctatcgacagatatggcgctcgtcctg
tctaagttgtttatgcgacagatatcgcagacgcatgcagaggatcagacgggcatttct
ctttggacgttggcggacattgaaaaggctcaggctaagcagcgtgcccttgaactcgag
caggaaaaggcaggcgggttggacgaaaggaacgccatacccgccccaatggaagtcgac
gatgagtacgggactggcggtttagacgatcagacccttggagaggtagatatcgacgta
taa
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integrated database retrieval system
