Fomitiporia mediterranea: FOMMEDRAFT_155378
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Entry
FOMMEDRAFT_155378 CDS
T03132
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
fme03015
mRNA surveillance pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_155378
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_155378
03015 mRNA surveillance pathway
FOMMEDRAFT_155378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_155378
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_155378
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_155378
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FOMMEDRAFT_155378
Spliceosome [BR:
fme03041
]
Complex C
Other components
EJC/TREX
FOMMEDRAFT_155378
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
FOMMEDRAFT_155378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18674481
NCBI-ProteinID:
XP_007265855
JGI:
Fomme1_155378
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MASHDNTEELIDYEDEQDVIANGAAAVSNGAAAGDGDDKEKKNFSGIHSTGFRDFLLKPE
LLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVS
VLVLCHTRELAFQIRNEYNRFAKYMPDVRIATFYGGTPVQKDAEILKDKSKCPHIVVATP
GRLNALARDKILLPTHVKHFVLDECDKMLEQLDMRRDVQEIFRVTPHHKQVMMFSATLAK
DIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAQKNRKLNELLDSLEFNQVVIF
VKSVARAIELDKLLQSCNFPSISIHSGLAQEERINRYTAFKAFEKRILVATDIFGRGIDV
ERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFVASEADQTVMSQIQARFEVAVPE
LPEKIDSASYMTS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtcacgacaacaccgaggagctgattgactacgaagatgagcaggacgtgatc
gctaacggcgctgctgctgtttcaaatggtgctgcggcaggtgatggtgacgacaaagag
aagaaaaacttctctggcatccactcgacgggcttcagagacttccttctgaaaccagag
ttacttcgtgccatcagtgacctcggttttgaacatccttctgaagttcagcaggagtgc
atccctcaggctgttcttggaatggatgttctctgccaggcaaaatccggccatggaaaa
acggcagtgtttgtactggcgacactccaacaacttgaaccagtcaacggcgaggtgtca
gtgcttgtcctgtgccacaccagagagctcgccttccaaattaggaacgagtataaccgg
tttgcgaagtacatgcctgatgttcgcattgcaactttctacggcggcacaccagttcaa
aaggacgcggaaattctcaaagacaaaagcaaatgtcctcacatcgttgtagcaacgccc
ggccgactaaatgcgctcgcaagagacaaaattcttttgcctacacacgtgaaacacttt
gtcctcgatgagtgtgataaaatgctcgaacagctcgacatgcgtcgtgacgttcaagag
atcttccgcgtaaccccgcatcataagcaagttatgatgttctccgcgactttagctaaa
gatatccgagtaacgtgtaagaaattcatggcgaaccctctcgaaattttcgtggatgac
gagacgaagctcaccctgcacgggttacagcagcattacgtcaaacttgaagaagctcaa
aagaataggaagctcaacgaactccttgattcattggagttcaaccaggttgtcattttt
gttaaatctgtagcacgtgctatcgagcttgacaaattgttgcaatcctgcaacttccca
agtattagcattcattctggtttggcacaagaagagcgtatcaaccgatacactgcgttc
aaagcatttgaaaaacgaattctggtagccacagacatcttcggccgtggtatcgacgtt
gagcgtgtcaacatcgtcatcaattatgactgtcctccggatgcagacagttatctccac
cgtgttgggcgtgctggacgctttggtacaaagggtttagctatcaccttcgtggcttct
gaggcagatcagacggttatgagccagatccaggcgaggtttgaagtggccgttccagag
ttgccggagaaaattgattccgcgagctatatgacatcgtga
DBGET
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