Fomitiporia mediterranea: FOMMEDRAFT_156196
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Entry
FOMMEDRAFT_156196 CDS
T03132
Name
(RefSeq) Tfb4-domain-containing protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
fme
Fomitiporia mediterranea
Pathway
fme03022
Basal transcription factors
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOMMEDRAFT_156196
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_156196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_156196
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_156196
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOMMEDRAFT_156196
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOMMEDRAFT_156196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
18674617
NCBI-ProteinID:
XP_007266550
JGI:
Fomme1_156196
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MKCKAVARHQALKIADRRKFTCCIAADIDNPSHLAIILDLFPTQWHLSSLPKNAYPHSFK
SFLAQTLAFLNFHLTLKHENALVVYGAFPGKSVLLYSSTDHKAEGADDSIAVPNTYLPFK
VVDTAVTKRISEELDAMSDFDEEALRQLVGALTKALCRTGLSFLKPCSNLDLLDERAVID
INWLVNPTATSIDSDVPVVSPEPRIVILSVSPDLSTSYIPLMNSIFSAQNLCKVAIDVCK
IYAPDAVFLQQAAHLTGGSYIYLERRDALLQHLLMTFLPTPSIRQPIAVPTQDKIDFRVA
CFFHKTIVDIGFVCSVRLSILCQLVPVCSTCRTKFPIKNLQRLNVSRPTPPPGQRASSVA
PSGARMPVTPTPGGTGTGTGTLRPTAPSALGSSLTLNVGSMSLGSSDNIRTNGSVVTASG
NATPNSTGSGLG
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgcaaagccgtcgcaaggcatcaggcgctgaaaatagccgatcgtagaaaattc
acatgttgcatcgccgccgacatagacaatccttcacatctggccatcatcctcgacctg
ttcccgactcaatggcatctctcctctcttccaaagaacgcgtatcctcattcattcaag
tcgtttctcgcacaaactctcgcatttctgaactttcatctaaccctgaagcatgaaaat
gcgctcgttgtgtacggtgcatttcctggaaagagtgtcctattatactcttcgacggat
cacaaagccgaaggtgccgacgatagtatagcggtcccaaatacgtacttgccgttcaag
gtcgttgacactgctgtaacgaagaggattagtgaagagctagacgcgatgtcagatttt
gacgaagaggcactgcgtcagcttgtcggagcgttaacgaaggcgttatgccgtacggga
ctctcttttctcaaaccttgctcaaacctcgatttgcttgacgaacgagctgtgatagat
atcaactggctcgtaaatccaactgctactagcattgactcagacgtgccggtagtatcg
ccggaacctcgaattgtcattctctctgtctcgccggacttgtcaacgtcctatatccct
cttatgaacagtatcttttctgctcaaaacctgtgcaaagtcgcaatagatgtttgcaag
atatatgcacccgatgcagtatttttacaacaagctgcgcatttgactggaggatcatac
atctaccttgaaagacgagatgccctattgcaacatcttctgatgaccttccttccgacg
ccatctatacggcaacctatcgcagtccctacgcaagataaaatagacttccgagttgca
tgctttttccataaaacaatcgtggacatcggatttgtgtgttcagttcgcttatccatc
ctttgccagctagtccctgtctgttcaacatgccggacgaaattcccgataaagaacttg
caacggttaaatgtttctcgtccgactccgccgcctggtcaacgagcttcttctgtagca
ccttcgggagcgcggatgcccgtcacacctacaccaggaggtacaggaactggaactgga
actctgcgccccactgcacccagtgcgttaggctctagcttgacgcttaacgtcggctca
atgagtctaggatcatcggataatatacgaacaaatggctccgttgtcacggcgagtggg
aacgctacgccgaactcgaccggttcagggttggggtga
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integrated database retrieval system
