Fomitiporia mediterranea: FOMMEDRAFT_157996
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Entry
FOMMEDRAFT_157996 CDS
T03132
Name
(RefSeq) hypothetical protein
KO
K12882
nuclear cap-binding protein subunit 1
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
fme03015
mRNA surveillance pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_157996
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_157996
03015 mRNA surveillance pathway
FOMMEDRAFT_157996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_157996
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_157996
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
FOMMEDRAFT_157996
Spliceosome [BR:
fme03041
]
Common components
Common spliceosomal components
Cap binding complex
FOMMEDRAFT_157996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AadA_C
Retrotran_gag_2
DUF3106
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
18674926
NCBI-ProteinID:
XP_007268158
JGI:
Fomme1_157996
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MSWNRHGGGGRRRNNRDEYDDRLGREVYETPEQHLRTTIIHYGNVDADQELARVAKEIRE
ENARSSNVPAIAEGFRIGVTEEPYKIPHYAALLRALDEGAEGTTDTMLGKQVLDDFWKGF
QGFLDKLAWRQIRLCVHFFAHLTSAQVISVSSLLSLLQSFTAALEEFGVSHSRAKNAALC
AAEGLMRAGPELKSQSPSEVTEIISAIQTYAETSSGSKLLASPLVKLHTESDAFEGTSEL
LDNAIAVLKSLDENDFSDCDSSFLKPYSVKSDDPAPYFDLPSVLVPPEAIELESLTGVAE
DSAAVVKNEEWPEYRIRTFANDMTADPTTVLGYAVNVLISDVIDIFEVNRKECARFLFEL
PKWLPSGTFKPRPGVPSENGAASGPLWQLESCIMESILAKMLVLPRPLHRPMYYIALITE
LCKLQPSTTGPAVGKSIRKLYGYLVDGLDVAAAHRFTEWFATHMSNFGFQWVWKEWVPDL
SLPSHHPKRNFIRRAIEIEIRLAYFDRIQKTLPEAYQAPGTDALPDEAPGPEFTYDDPRN
PYHEPAEQLLNLLRGRAKAEDVNTHLDTLKSTVADLSEGDVRVDAVVRSITVQALLHIGS
RSFSHFLNAIERYLLLLRTLSSGAEAKQDILNAVAQFWQRNRQMVRIVFDKLMQYQIVDP
SDVIAWAFSPHPQDEDTNVERIDTFRWEIIENALDKANGRVMIARKKVTTLRKEEDDSRA
RSTYTALEEKPAEDSPALRTALKAYSTLSSEQRAVLSKTLNEFVNALSDTSAVLTESSWD
NRSNWTNTEWNIWETWGWYRNFCRLFAPYLRAYSTALGTVAFAKVESSEDDAAKLLKRVW
NVSTGQEA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagctggaacagacatggtggtggtggacggaggaggaacaacagagatgaatacgat
gaccgcctgggacgtgaggtgtatgaaacacctgagcagcatctgaggactacgatcatt
cattatggcaatgtggatgccgaccaggagcttgcaagggtggcaaaggaaattcgtgaa
gagaatgctaggtcttccaacgtccctgctatagcagaaggttttcgaataggagtgaca
gaagaaccgtacaaaattcctcactatgcagccctcctgcgcgctttagatgaaggcgca
gaaggtacaaccgatactatgctgggaaaacaggttctggatgatttctggaagggattc
caaggattcttggataaattggcgtggaggcaaatcaggctttgtgtccacttcttcgcg
catttgacgagtgcacaagtcatttctgtatcttccttgctttcattgttgcaatcgttt
acggctgccttggaggagtttggtgtttctcatagccgagctaagaatgccgctctttgt
gcggcggagggccttatgagggcaggaccggagttgaaaagccaatctccttcagaagtc
acagagatcatttctgccattcagacgtacgccgagacgtcttctggaagtaaacttctg
gccagtccgttagtaaagctacacaccgagtccgatgcattcgaaggaacatcagagctt
ctggataatgcaatcgccgtgctcaagtcacttgatgagaacgacttttccgactgcgat
tcgagctttttgaaaccgtattcagtcaagtcagatgatcctgctccgtactttgacctg
ccttcagtgcttgtgcctcccgaagccattgagcttgaaagtctcaccggtgttgcagaa
gatagtgcagctgtggttaaaaatgaggaatggcccgaataccgtatacgcacttttgcc
aacgatatgactgctgatcccacgacggtgctcggctatgccgtcaatgtcctcatctcc
gatgttattgacatcttcgaagtaaataggaaggaatgtgctaggttcctctttgagctt
cctaaatggttgccgtccggtactttcaagccaaggccaggcgtgccaagtgagaacggt
gctgcaagtggaccattatggcagcttgaaagctgtatcatggaaagtatcctcgcaaag
atgcttgtcctcccaagaccgttacacaggccgatgtactacatagcattgattactgag
ctctgcaagctgcagccatcgacaaccgggcccgcggtgggcaagtcaatacgaaagctc
tatggttatctcgtcgatggtctggacgtagcagctgctcataggttcacagaatggttt
gcgacacacatgagtaatttcggtttccaatgggtatggaaagaatgggttccggatctg
tcattgccaagccaccatccaaaacgcaacttcatccgccgagcgatcgaaatcgagata
cgacttgcatattttgatcggatacagaagacgcttccggaggcttatcaagctccagga
actgatgctctgcctgatgaagccccaggacctgagtttacatatgatgatcctcgaaac
ccataccatgaacctgctgagcagctgcttaacctcttacgtggtcgtgcaaaggccgag
gacgttaatacgcacctcgatacgctgaaaagcaccgttgcggatttgtccgaaggtgac
gtccgtgttgacgctgttgtgcgctcgatcacagtccaagctttgttacacatcgggtct
cgttcgttctcccacttccttaacgccattgagcgctacctgctccttttacgtacactt
tcgagtggagcggaggcgaagcaagacatcctcaatgccgtggcacagttttggcaacgt
aaccgccaaatggtacgcattgtctttgacaagctcatgcagtatcaaattgtcgatccg
tcggatgtcattgcttgggctttctcgccgcatcctcaggacgaggacacgaatgtagag
cgaattgatacgttccgatgggagattattgagaatgcgttggataaagcgaatggacgt
gtgatgattgctagaaagaaggtaactacgttaaggaaagaggaggatgatagtcgggcg
cgttcgacatacacagctttggaagagaaacctgcggaggactcaccagcgcttagaact
gcgctcaaagcgtattcaaccttatcgagcgagcagcgtgcagtactgtcaaaaacactt
aacgaattcgttaacgctttgtcggatacaagtgccgtcctcaccgagtcctcctgggac
aatcgatcgaattggacgaacacggagtggaatatttgggaaacgtggggatggtaccgc
aacttctgtcgactgtttgccccgtatcttcgtgcttattcgactgcgctggggacggtc
gcgttcgccaaggtggaaagctcagaagacgatgcagctaagctcctcaagcgtgtatgg
aatgtttctacaggccaggaggcctaa
DBGET
integrated database retrieval system
