Fomitiporia mediterranea: FOMMEDRAFT_16021
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Entry
FOMMEDRAFT_16021 CDS
T03132
Name
(RefSeq) ATP-dependent RNA helicase dbp9
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_16021
Enzymes [BR:
fme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOMMEDRAFT_16021
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Pre-60S particles
Helicases
FOMMEDRAFT_16021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
18675321
NCBI-ProteinID:
XP_007261281
JGI:
Fomme1_16021
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MTDVSLLDSQATFASLTHVLDARLLRALADMGFARPTLVQAQAIPLALEGRDILARARTG
SGKTASYCVPLAQKILRKKDAFSIEDPARQAVRALVLVPTKELADQVAKHLRQLLAYCEK
EIVVVNLVSGTSTHLQRVLTSEKPDIVIGTPSRALSALQVKALSLSDLESLVIDEADLVL
SYGHDEDIRTVINGGYLPKVYQSFLMSATMTKDVELLKGLVLRNPAILRLEEDEGDAARL
SQYVVKCNEVDKFLLTYVILKLKLVKGKTIIFVNDVDRCYRVKLFLEQFSIKSCVLNSEL
PLNSRVHIVQEFNKGVYDYIIATDEGSGSIEPDSDDETDEEVQVDGEQLTSTQRDVEPIE
PGDPGPSSTKTMKRKRSPSPRPTPEGTTTKKNKSRTQNDKEYGVVRGVDFIDVACVLNFD
LPTSARAYTHRVGRTARAGRTGMALSFVVPAAEWGKNKVVGCLPSARRDEVRFSRIERQQ
ATRGSKINEYKFDMKQVEAFRYRMQDALRSVTRTAIREARVKELKSEILNSEKLKAHFEE
NPLDLEYLRHDKPLHPTRVQPHMKHVPKYLMPRMGTAASAGELTAGAGGGEKEASFVPFR
KYTVRGRGRGRGSHTGPGKGRKKKSDPLKKFGR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgtatctttgctggactcgcaggcaacattcgcatccttaacacacgtgcta
gatgctcgccttcttcgagcactcgctgacatgggctttgcacgtcctactctcgtacaa
gcgcaggctataccactcgcactagaaggccgtgacatactcgctcgagctcgtactgga
agtggaaagactgcctcatattgcgtcccactcgctcagaagatacttaggaagaaggat
gcgttcagtattgaggaccccgcgcgtcaagcagtaagggcattggtgcttgtgccaacg
aaggaacttgccgaccaggtggcaaagcacctgagacagttgcttgcatattgcgagaag
gaaattgtggtagttaacctcgtttctggaacttcgacgcatcttcaacgggttctcaca
tctgagaaacccgatattgtcattggaaccccttcccgagcacttagtgcactccaagtg
aaggctctatcactctcggacctcgaatcactggtcattgacgaggccgatcttgttctg
tcctatggtcatgatgaggacataaggacggtcataaatggcgggtatcttcccaaggtt
taccagtctttccttatgagtgctaccatgacgaaggatgtggagctactcaaaggtctc
gtcctcaggaatccggcgatcttacgtttagaggaagatgaaggcgacgccgcacgactt
agtcaatatgtggtgaagtgcaacgaagttgacaaattccttttgacatatgtcatcctc
aagctcaagcttgtaaaagggaagaccatcatctttgtaaacgatgtcgaccggtgctac
cgcgtcaaactcttcctggagcaattttctattaaaagttgtgtcctgaactcggagctt
ccgttaaactccagagtacacattgttcaggaattcaataaaggagtatacgactacatt
atcgcaaccgatgaaggtagtggttcaatcgagccagattctgatgacgaaacggatgaa
gaggtccaagtggatggcgaacaattaacgtcgacgcagcgcgatgtggagccgatcgag
ccaggtgatcctggcccttcatcaaccaaaacgatgaaacgaaagcggtcgccatctcct
cgaccgactcctgaaggcaccacaactaagaagaataagtcacgtacgcagaacgacaag
gaatacggagtcgtgcgaggtgtggacttcatcgacgtcgcctgtgtgctcaacttcgac
ctcccaacctccgcacgtgcatacacacatcgcgttggtcgtaccgctcgtgcaggccgc
acgggaatggcactatcctttgtcgtcccagcagcggaatggggtaagaacaaggtcgta
ggctgcttgcccagtgcgcgccgcgatgaagttcggttcagtcgcatcgagcgccaacaa
gctacgcgtggcagtaaaatcaatgagtacaagttcgacatgaagcaggtcgaagcattc
cgatatcgcatgcaggatgcgcttcgctcagtgactcgaaccgctatccgagaagcccga
gtgaaggaattgaaatcggagatcttgaactcagaaaagctgaaggctcattttgaagaa
aatccgctcgatctagagtatctccggcatgacaagccactccatccgacgcgcgtgcag
ccacacatgaaacatgttcctaagtacctcatgccgcgcatgggcaccgccgcctccgcc
ggcgagctcacagctggtgctggcggcggtgaaaaggaagcaagcttcgttcctttccgt
aagtacactgtacgaggacgcggtcgaggtaggggtagtcatactggaccgggcaaggga
cgcaagaaaaaatcggatccactgaagaagttcggtcgatga
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