KEGG   Fomitiporia mediterranea: FOMMEDRAFT_162310
Entry
FOMMEDRAFT_162310 CDS       T03132                                 
Name
(RefSeq) hypothetical protein
  KO
K10610  DNA damage-binding protein 1
Organism
fme  Fomitiporia mediterranea
Pathway
fme03420  Nucleotide excision repair
fme04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    FOMMEDRAFT_162310
  09124 Replication and repair
   03420 Nucleotide excision repair
    FOMMEDRAFT_162310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:fme04121]
    FOMMEDRAFT_162310
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_162310
Ubiquitin system [BR:fme04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     FOMMEDRAFT_162310
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      FOMMEDRAFT_162310
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      FOMMEDRAFT_162310
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 18675800
NCBI-ProteinID: XP_007271798
JGI: Fomme1_162310
LinkDB
Position
Unknown
AA seq 1161 aa
MKAVATFHQPTSVVGSIKTTLTEDEDTEYLVVAKSSILEVFAILPDALRLQCVLEIWGRI
TSLQAVPTDDENSQHHLLVLTDHPDPKLFLLEYVQSNAGSGPSLKTLKTVSLHERNARPT
EYVSKCLVDHKGKVAVACSYTGKLRVLELEKGLINSEFDTAVRELNIVSLCFLRTTNARA
TALAILYKDYMQKLSVTSHDLSLADLELSPSPSSFLPEFHVPDEDSNLLIPVPPQIKSSW
NVNGGVLVLGGSTIAFYSIDRKQKKKNSSSQSKSSTSKIPQAEVNWPYFDITAWAQIDED
GLRYLLGDSFGRLALLAINPQYAYLDIVLLGEVSPPTSLTPLASQYIYVGSHFGDSQLIR
VTSERSSNGSYLEISDTFKNIAPIMDAVFEDTDDSGQPTIITCSGGESTGSLRVIRNGAN
FNEDARIEGIANITGMWPIRRQYDDTFHHYMLVTTDTNTHLLELPNSQQETAVSRSNDFS
DLTIDSRTLVAGNMLTRLMSESGKSEYVSSSYVVQVSRDSVILLNTRTGLREDQWSPGPG
NKIVLADISPSQICVAISGGTVVLLNLFADKINEQSRKQFYSPDGSSSEISALSISPMKR
GANFSSFVALGFWSSHEVKVLRLPTFEQIDAVPVVMPHLPRSLLLCDFSEEESKPHRYLM
VGLANGTVVSMPFAEKGVLGEKKFFGLGGAPVSLSRCEVNDKPAVFASGARSALFYRSKD
TLSHSPVLIKDVTFASAIHSESFTSSMALSTLDGLVVGRVLELDKLHIRTVFMGKENPTK
LAYHSAAKLLGVGCLKLDRSTFKGAPVAASSFKLVDTVDFRTTHEISLEPNEEITAVALV
SLDCGIGWDTFFAVGSVYFDETEREPSRGRILIISTGSKRNQTPHILASTEVKGAVNALT
CIQGKLVVAINTSVDVFRLKHGDNTVLTAVTSWNHNYLVITAVVMDDLIVIGDAVSSLAV
LKLEDDKLTTFARDYSPLWPLCIGAFDNKTVIGANNDNNLFSYRLQKQGSKMLLDQDGLY
NIEEIVNKCVPGCFDSTPNKFGLQTKQLLFTSTGRIAVVVNVEDDLSRLLSSLERNMAGV
IKGPGDLDHTLWRAPSNSRGRSDANGAATGFLDGDLLERFLDYPYPSPEITRILSGRNEA
EKIGTSYSEIRAILESLRSTH
NT seq 3486 nt   +upstreamnt  +downstreamnt
atgaaggccgtagctacatttcaccagccgacttcggtcgtgggctctatcaagactact
ttgaccgaagatgaagataccgaatatcttgtcgttgccaagtccagcattctcgaggtc
tttgccattcttcccgacgcgttacgcttacagtgtgtccttgagatttggggacgcatc
acgtctctccaagcagttccgacagacgatgagaactctcagcaccacctgcttgtatta
acggaccatccagacccaaagttgttccttcttgaatacgtacaaagcaatgcaggctct
ggaccaagcttgaagactcttaagactgtatcactccacgaacgaaatgcaaggcccacc
gaatacgttagcaagtgtctcgtggaccacaagggaaaggttgcggttgcctgttcatac
actgggaaactcagagtcctagagttggaaaaaggactcattaattccgaatttgatacc
gctgtgcgcgaactaaacatcgtatcgctatgctttcttcggactacgaatgcccgcgca
accgcactggcaatcttatataaagattacatgcaaaaattaagcgtcacatcgcatgac
ctctccctagctgatcttgaactgtctccttcgccttcttcattccttcccgaatttcat
gttcctgacgaagattccaatttattgattcctgttccacctcagataaagagtagctgg
aacgtaaatggaggtgttttggttcttggtggtagcaccattgctttctattctatcgat
aggaaacagaaaaagaagaactcttcatcgcaatcaaaatcatccactagcaagataccc
caagccgaagtaaactggccgtattttgacattacagcttgggcacagattgacgaagac
ggcttaaggtatttgctcggcgacagctttggccggctcgctcttcttgcgattaaccct
cagtacgcgtacctcgacatagtccttctcggagaagtatcgcctccgacatccctaacg
ccgctagcatcacaatacatatacgtcggttcacacttcggagactcacaactcatccgc
gtcacctccgaacgatcttcgaatggttcataccttgagatttctgatacttttaagaac
atagcacctataatggatgctgtattcgaggacaccgatgatagtggccagcctactatc
atcacttgctcaggaggcgagagcaccggttcgctacgtgttattcggaacggcgccaat
ttcaatgaagatgctcgcatagaaggtattgcgaacataaccggaatgtggccgataagg
agacagtacgatgatacattccatcactacatgctagttacaacagatacgaatacgcat
ctcttagagttacccaattcgcaacaagaaactgccgtttctcgttccaatgacttctcc
gacttgacaattgattcacgcaccctcgtcgcagggaatatgctaacccggcttatgtct
gaaagtgggaaatccgaatatgttagcagcagttacgtcgtacaggttagccgagattct
gtcatactcttaaacacgagaaccggattgcgcgaagaccagtggtctccaggacctgga
aacaagattgtcttggcggatattagtcccagtcaaatttgcgtcgcaatctcgggaggg
actgtcgttttattgaacttatttgcagacaaaattaatgagcagagtcgtaaacaattc
tattcacctgatggatcgtcttccgagatatccgcactttcgatttcacccatgaaaaga
ggcgccaatttttcttcgttcgtcgctctggggttctggtcgtcacatgaagtaaaagtt
ctccgattaccaacctttgagcaaattgacgcggtacctgtcgtcatgcctcatctccca
cgatccttacttctctgtgacttcagcgaagaagagtctaaaccacatcgctacttaatg
gttggccttgcgaatgggactgtggtatcgatgccttttgccgagaagggagtacttggt
gaaaagaaatttttcggtcttggaggagcacccgtttcgttgagtcgatgtgaggttaat
gataagccggcggtgtttgctagtggtgctcgatcagcacttttctatagatcgaaggat
acgttaagtcattcgcctgtcctcatcaaggatgtgacattcgcctcagctattcattca
gaatcgtttacttcctcgatggctctttcgacgcttgatggtctagtcgtaggtcgggtt
ttggaacttgacaagttacatatacggacggtattcatgggaaaggaaaatcctacgaaa
cttgcatatcattcagctgcgaagctgcttggtgttggctgtttgaagctggaccgaagc
acattcaaaggcgctcctgtggccgccagctcgttcaagcttgtcgacaccgttgatttc
agaaccactcatgaaatatccctcgagccgaacgaagagataactgccgtcgcactcgtc
tctctagactgtggaattggttgggatacgttcttcgccgttggttcagtttactttgac
gaaaccgaacgagaacctagtcgtggtcggatcttgatcatctcaactgggtcgaagcga
aatcaaacaccccatatattagcatctacggaggtaaaaggagctgtgaatgcacttact
tgtattcaggggaagttggtcgttgcgatcaacacaagcgtcgatgtattccgcctcaaa
catggagacaacactgttctcaccgccgtaacaagctggaatcacaattacctcgtaata
acagcagttgtgatggacgacctaatcgtcatcggcgacgcagtctcttccctggccgtc
ctgaagctcgaagacgacaagttaacaacgtttgcaagggattacagtccattatggcct
ttatgcatcggggcgtttgacaataaaacagtcattggagcgaacaacgacaacaactta
ttctcgtacaggcttcaaaaacaaggaagtaagatgcttcttgaccaagacggtctgtac
aacattgaagagattgtcaataaatgcgtgcccggttgctttgactccacaccgaataaa
tttggtttacagacgaagcaactgctgttcacttctaccggccgtatcgctgtcgttgtc
aacgtcgaggatgatctttctagactgcttagtagcttagaaaggaacatggcaggcgtt
attaagggaccaggtgatctagaccatactctctggcgagcaccatcaaattcacgaggt
cgttccgacgcaaacggtgcagctaccgggttcctcgacggtgatttactcgaacgattc
ctcgattacccttacccttctccagaaatcacccgcatactttccggtagaaacgaagca
gagaaaatcggaacgtcgtattcggagattcgcgcaattctggaatcactacgaagcaca
cactag

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