Fomitiporia mediterranea: FOMMEDRAFT_164573
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Entry
FOMMEDRAFT_164573 CDS
T03132
Name
(RefSeq) RNA-binding domain-containing protein
KO
K12876
RNA-binding protein 8A
Organism
fme
Fomitiporia mediterranea
Pathway
fme03013
Nucleocytoplasmic transport
fme03015
mRNA surveillance pathway
fme03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
FOMMEDRAFT_164573
09122 Translation
03013 Nucleocytoplasmic transport
FOMMEDRAFT_164573
03015 mRNA surveillance pathway
FOMMEDRAFT_164573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_164573
03041 Spliceosome [BR:
fme03041
]
FOMMEDRAFT_164573
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
FOMMEDRAFT_164573
Spliceosome [BR:
fme03041
]
Complex C
Other components
EJC/TREX
FOMMEDRAFT_164573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
18676165
NCBI-ProteinID:
XP_007261616
JGI:
Fomme1_164573
LinkDB
All DBs
Position
Unknown
AA seq
166 aa
AA seq
DB search
MSDEEMNIDDVGGVVRRRGRGFQKSGGDDAAVSAEPTYDRVDATTVNSAADTKAARSVEG
WIVFVTNVHEEATEEDLMDKFGEYGEIKNLHLNLDRRTGYVKGYALVEYETLAEAQAAIT
NATGSTLLEQDLECDFAFVRPPPSGPKQGGRGRGGRGRSASPGRRR
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggagatgaacatcgatgatgttggcggtgtcgtccgtcggagaggccgc
gggttccaaaagtctggcggagacgacgccgcggtaagtgctgagccgacgtatgatcga
gtcgacgcgactacagtgaacagcgctgcggacaccaaagctgcgcggtccgtggagggc
tggattgttttcgtcacgaacgtgcatgaggaggccactgaagaagacttaatggataag
tttggagagtatggggaaattaaaaatttacacctcaacctggataggcgaactggctat
gtaaagggctatgctcttgttgaatatgagacgctggcggaagctcaagcagcgattacc
aacgcgactgggtcgacgttgcttgagcaggacctcgaatgcgatttcgcgtttgttcgt
ccaccgccttctggtccgaaacaaggtggtcgtggacggggtggacgtggacgcagcgca
agtccgggaagaaggcgatga
DBGET
integrated database retrieval system
