Fomitiporia mediterranea: FOMMEDRAFT_16485
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Entry
FOMMEDRAFT_16485 CDS
T03132
Name
(RefSeq) nucleotide excision repair, TFIIH, subunit
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
fme
Fomitiporia mediterranea
Pathway
fme03022
Basal transcription factors
fme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOMMEDRAFT_16485
09124 Replication and repair
03420 Nucleotide excision repair
FOMMEDRAFT_16485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fme03021
]
FOMMEDRAFT_16485
03400 DNA repair and recombination proteins [BR:
fme03400
]
FOMMEDRAFT_16485
Transcription machinery [BR:
fme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOMMEDRAFT_16485
DNA repair and recombination proteins [BR:
fme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOMMEDRAFT_16485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb5
Binary_toxB_3
Motif
Other DBs
NCBI-GeneID:
18676220
NCBI-ProteinID:
XP_007261884
JGI:
Fomme1_16485
LinkDB
All DBs
Position
Unknown
AA seq
66 aa
AA seq
DB search
MKAIKGVLLTCDAAVKQILLTLNEKQSFIVDDLDDFHVVIKADMEFNVRRQLEAELEKNT
YSLDQQ
NT seq
201 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccatcaaaggcgtcttgctcacatgtgacgcagcagtcaagcagatcttgctc
acactcaacgagaaacagagcttcatcgtcgatgatctagatgatttccacgttgtcatc
aaggcagatatggagtttaacgtccgtagacagctggaggctgagctcgagaaaaataca
tatagtctcgatcagcaatga
DBGET
integrated database retrieval system
